LOCUS AEE78598.1 295 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana telomere repeat binding factor 3 protein.
ACCESSION CP002686-6904
PROTEIN_ID AEE78598.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="TRB3"
/locus_tag="AT3G49850"
/gene_synonym="ATTRB3"
/gene_synonym="TBP2"
/gene_synonym="telomere repeat binding factor 3"
/gene_synonym="TELOMERE-BINDING PROTEIN 2"
/inference="Similar to RNA sequence,
EST:INSD:ES197304.1,INSD:EL213896.1,INSD:BP572969.1,
INSD:EL147744.1,INSD:AV797433.1,INSD:DR375971.1,
INSD:BP572607.1,INSD:EH978568.1,INSD:DN604661.1,
INSD:BP573407.1,INSD:ES016401.1,INSD:EH969461.1,
INSD:BP571261.1,INSD:AV796699.1,INSD:EL042070.1,
INSD:EL101332.1,INSD:BP570742.1,INSD:EL108260.1,
INSD:BP574066.1,INSD:EL283027.1,INSD:BP565084.1,
INSD:EL114190.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY519542.1,INSD:AY079043.1"
/note="telomere repeat binding factor 3 (TRB3); FUNCTIONS
IN: single-stranded telomeric DNA binding, DNA binding,
protein homodimerization activity, sequence-specific DNA
binding transcription factor activity, double-stranded
telomeric DNA binding; INVOLVED IN: in 7 processes;
LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 14 growth stages; CONTAINS
InterPro DOMAIN/s: Winged helix-turn-helix transcription
repressor DNA-binding (InterPro:IPR011991), SANT,
DNA-binding (InterPro:IPR001005), Homeodomain-like
(InterPro:IPR009057), Myb, DNA-binding
(InterPro:IPR014778), Histone H1/H5 (InterPro:IPR005818),
Myb transcription factor (InterPro:IPR015495),
Homeodomain-related (InterPro:IPR012287), HTH
transcriptional regulator, Myb-type, DNA-binding
(InterPro:IPR017930); BEST Arabidopsis thaliana protein
match is: Homeodomain-like/winged-helix DNA-binding family
protein (TAIR:AT5G67580.2); Has 536 Blast hits to 530
proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa
- 28; Fungi - 59; Plants - 395; Viruses - 0; Other
Eukaryotes - 54 (source: NCBI BLink)."
/db_xref="TAIR:AT3G49850"
/db_xref="Araport:AT3G49850"
intron_pos 51:0 (1/4)
intron_pos 122:2 (2/4)
intron_pos 151:0 (3/4)
intron_pos 179:0 (4/4)
BEGIN
1 MGAPKLKWTP EEETALKAGV LKHGTGKWRT ILSDPVYSTI LKSRSNVDLK DKWRNISVTA
61 LWGSRKKAKL ALKRTPLSGS RQDDNATAIT IVSLANGDVG GQQIDAPSPP AGSCEPPRPS
121 TSVDKIILEA ITSLKRPFGP DGKSILMYIE ENFKMQPDMK RLVTSRLKYL TNVGTLVKKK
181 HKYRISQNYM AEGEGQRSPQ LLLEGNKENT PKPEENGVKN LTKSQVGGEV MIMGMTEKEA
241 AAAAARAVAE AEFAMAEAEE AAREADKAEA EAEAAHIFAK AAMKAVKYRM HSQTR
//