LOCUS AEE78570.1 290 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Aldolase-type TIM barrel family protein
protein.
ACCESSION CP002686-6867
PROTEIN_ID AEE78570.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G49640"
/inference="Similar to RNA sequence,
EST:INSD:BP856405.1,INSD:ES032951.1,INSD:EH799659.1,
INSD:AU239627.2,INSD:EH956706.1,INSD:EL032759.1,
INSD:EH833336.1,INSD:AU230961.1,INSD:EL215565.1"
/inference="Similar to RNA sequence, mRNA:INSD:AK118757.1"
/note="Aldolase-type TIM barrel family protein; FUNCTIONS
IN: tRNA dihydrouridine synthase activity, FAD binding,
catalytic activity; INVOLVED IN: regulation of nitrogen
utilization, oxidation reduction, tRNA processing,
metabolic process; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785),
tRNA-dihydrouridine synthase (InterPro:IPR001269),
tRNA-dihydrouridine synthase, conserved site
(InterPro:IPR018517); BEST Arabidopsis thaliana protein
match is: FMN-linked oxidoreductases superfamily protein
(TAIR:AT5G67220.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink)."
/db_xref="TAIR:AT3G49640"
/db_xref="Araport:AT3G49640"
intron_pos 7:2 (1/7)
intron_pos 58:2 (2/7)
intron_pos 95:0 (3/7)
intron_pos 140:2 (4/7)
intron_pos 186:1 (5/7)
intron_pos 222:0 (6/7)
intron_pos 264:2 (7/7)
BEGIN
1 MRTPTQCSPS TVASGTSEFV EKGTDNVVFS TCDEEKSRVV FQMGTSDAVR ALKASEIVCN
61 DVATIDINMG CPKAFSIQGG MGAALLSKPE LIHDILATLK RNLDVPVTCK IRLLKSPADT
121 VELARRIEKL GVPALAVHGR KIADRPRDPA KWDEIADVVA ALSIPVIANG DVLEYDDFSR
181 IKTATGAASV MVARGAMWNA SIFSPKGKSH WEDVKKKYLR KSILWNNDVK STKYTIKEMI
241 AHHSCLELPE GKSINKADTL EDLARLYDLE DYFWTVKNIG PLTHNLNHVL
//