LOCUS AEE78562.1 603 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Autophagy-related protein 13 protein.
ACCESSION CP002686-6856
PROTEIN_ID AEE78562.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="ATG13"
/locus_tag="AT3G49590"
/gene_synonym="autophagy-related 13"
/inference="Similar to RNA sequence,
EST:INSD:BP605051.1,INSD:CD532541.1,INSD:EH853514.1,
INSD:AV810977.1,INSD:BP607817.1,INSD:EH809680.1,
INSD:BP790241.1,INSD:BP582545.1,INSD:AV558869.1,
INSD:BG459524.1,INSD:CK120777.1,INSD:DR363281.1,
INSD:EH808241.1,INSD:AV814802.1,INSD:ES142214.1,
INSD:CD533938.1,INSD:CD533187.1,INSD:AV831099.1,
INSD:BP807896.1,INSD:BP602158.1,INSD:BU635197.1,
INSD:ES115493.1,INSD:EH816476.1,INSD:BP607410.1,
INSD:ES104147.1,INSD:EL261025.1,INSD:EL097703.1,
INSD:AI998019.1,INSD:AV812846.1,INSD:ES068797.1,
INSD:EH980532.1,INSD:EL037718.1,INSD:AV818410.1,
INSD:CD532487.1,INSD:EL097814.1,INSD:EG519218.1,
INSD:CD531950.1,INSD:N96160.1,INSD:EH853102.1,
INSD:BE528206.1,INSD:BP777339.1,INSD:BP607457.1,
INSD:EL099222.1,INSD:BX834935.1,INSD:AV831954.1,
INSD:EH988407.1,INSD:ES116119.1,INSD:EL253956.1,
INSD:EL181336.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX822365.1,INSD:AK227226.1,INSD:BX823392.1"
/note="Autophagy-related protein 13; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Autophagy-related protein 13 (InterPro:IPR018731); BEST
Arabidopsis thaliana protein match is: Autophagy-related
protein 13 (TAIR:AT3G18770.1); Has 1957 Blast hits to 674
proteins in 207 species: Archae - 0; Bacteria - 87;
Metazoa - 293; Fungi - 173; Plants - 114; Viruses - 5;
Other Eukaryotes - 1285 (source: NCBI BLink)."
/db_xref="TAIR:AT3G49590"
/db_xref="Araport:AT3G49590"
intron_pos 438:0 (1/2)
intron_pos 498:2 (2/2)
BEGIN
1 MDFPENLPSD IGRLEQIVSH FFPKALHIVL NSRIPSLQSR GRTRERLSGL NVRKSDKWFN
61 LVMGDRPAAL EKLHSWHRNI LDSMIIDIIL VHPISNDNLD DDDDHSDSVV RSAETVIERW
121 VVQYENPLIM SPQSSDSATR YQKVYKKSII LLRSLYAQTR LLPAYRVSRQ LSSSLASSGY
181 DLIYKVSSFS DIFSGPVTET MKEFRFAPVE VPPGRLCASV TYRSDLSDFN LGAHITLPPR
241 IITDYVGSPA TDPMRFFPSP GRSVEGHSFT GRAGRPPLTG SSAERPHSWT SGFHRPPAQF
301 ATPNQSFSPA QSHQLSPGLH DFHWSRTDAF GDNHQLSPPF SPSGSPSTPR YISGGNSPRI
361 NVRPGTAPVT IPSSATLNRY VSSNFSEPGR NPLPPFSPKS TRRSPSSQDS LPGIALYRSS
421 RSGESPSGLM NQYPTQKLSK DSKYDSGRFS GVLSSSDSPR FAFSRSPSRL SSQDDLDDPD
481 CSCPFDFDDV DESGLQYSHS LDRRKTSSSI SQSLPLGRRS SQDAAVGVLV HMLKTAPPLR
541 QDSSTYMASM SGVQREGSVS GTESEFSMAR STSDALEELR NYKQLKDLLL SKSKSGSGPT
601 RVH
//