LOCUS AEE78541.1 300 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana SER/ARG-rich protein 34A protein.
ACCESSION CP002686-6826
PROTEIN_ID AEE78541.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="SR34a"
/locus_tag="AT3G49430"
/gene_synonym="At-SR34a"
/gene_synonym="SER/ARG-rich protein 34A"
/gene_synonym="Serine/Arginine-Rich Protein Splicing
Factor 34a"
/gene_synonym="SRp34a"
/inference="Similar to RNA sequence,
EST:INSD:DR183537.1,INSD:EL094837.1,INSD:ES138964.1,
INSD:EL067038.1,INSD:ES098452.1,INSD:DR373202.1,
INSD:DR183539.1,INSD:DR183529.1,INSD:DR183528.1,
INSD:EH867880.1,INSD:DR183535.1,INSD:ES055172.1,
INSD:DR183540.1,INSD:EH861419.1,INSD:EL242507.1,
INSD:DR183530.1,INSD:DR183533.1,INSD:ES178849.1,
INSD:EL181955.1,INSD:BP796549.1,INSD:ES028138.1,
INSD:ES138903.1,INSD:ES018223.1,INSD:DR183536.1,
INSD:EH898755.1,INSD:EL999000.1,INSD:ES048238.1,
INSD:ES119858.1,INSD:CK120286.1,INSD:ES170162.1,
INSD:DR183538.1,INSD:EL990107.1,INSD:EL323123.1,
INSD:EL978891.1,INSD:ES181330.1,INSD:EH801864.1,
INSD:DR183527.1,INSD:DR183532.1,INSD:EL120886.1,
INSD:EL339197.1,INSD:ES187115.1,INSD:DR183534.1,
INSD:ES025439.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX822083.1,INSD:BT030067.1"
/note="SER/ARG-rich protein 34A (SRp34a); FUNCTIONS IN:
RNA binding, nucleotide binding, nucleic acid binding;
INVOLVED IN: RNA splicing; LOCATED IN: nucleolus;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition
motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding,
alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis
thaliana protein match is: RNA-binding (RRM/RBD/RNP
motifs) family protein (TAIR:AT1G02840.2); Has 322 Blast
hits to 306 proteins in 73 species: Archae - 0; Bacteria -
9; Metazoa - 1; Fungi - 75; Plants - 216; Viruses - 3;
Other Eukaryotes - 18 (source: NCBI BLink)."
/db_xref="TAIR:AT3G49430"
/db_xref="Araport:AT3G49430"
intron_pos 30:0 (1/11)
intron_pos 52:0 (2/11)
intron_pos 77:0 (3/11)
intron_pos 124:1 (4/11)
intron_pos 140:0 (5/11)
intron_pos 159:1 (6/11)
intron_pos 176:0 (7/11)
intron_pos 195:0 (8/11)
intron_pos 245:2 (9/11)
intron_pos 272:2 (10/11)
intron_pos 295:0 (11/11)
BEGIN
1 MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED
61 AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS GYGGGGGGGG SARFGVSRHS
121 EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD
181 DTEFRNPWAR GFIRVKKYES SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP
241 RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV
//