LOCUS AEE78535.1 353 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana CTC-interacting domain 10 protein.
ACCESSION CP002686-6809
PROTEIN_ID AEE78535.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="CID10"
/locus_tag="AT3G49390"
/gene_synonym="CTC-interacting domain 10"
/inference="Similar to RNA sequence,
EST:INSD:BP634578.1,INSD:ES029277.1,INSD:BP641919.1,
INSD:EL271980.1,INSD:EL191846.1,INSD:AU228450.1,
INSD:BP861588.1,INSD:ES133622.1,INSD:BP867103.1,
INSD:T21831.1,INSD:EL190563.1,INSD:EL991038.1,
INSD:AV564562.1,INSD:ES017156.1,INSD:DR257150.1,
INSD:DR257152.1,INSD:DR257151.1,INSD:EG520194.1,
INSD:EH856661.1,INSD:EG465567.1,INSD:DR257148.1,
INSD:T21413.1,INSD:EH843588.1,INSD:EL983088.1,
INSD:DR257149.1,INSD:AV558820.1,INSD:AU237398.1,
INSD:EL044816.1,INSD:BP860041.1,INSD:BP667864.1,
INSD:EL036079.1,INSD:BE520899.1,INSD:EG520195.1,
INSD:ES211685.1,INSD:DR240327.1,INSD:EL995781.1,
INSD:EL207618.1,INSD:BP587939.1,INSD:BP852520.1,
INSD:ES199148.1,INSD:ES164678.1"
/inference="Similar to RNA sequence, mRNA:INSD:AK228892.1"
/note="CTC-interacting domain 10 (CID10); FUNCTIONS IN:
RNA binding, nucleotide binding, nucleic acid binding;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: RNA recognition motif, RNP-1
(InterPro:IPR000504), Nucleotide-binding, alpha-beta plait
(InterPro:IPR012677), Ataxin-2, C-terminal
(InterPro:IPR009818); BEST Arabidopsis thaliana protein
match is: CTC-interacting domain 11 (TAIR:AT1G32790.1);
Has 1677 Blast hits to 1486 proteins in 221 species:
Archae - 0; Bacteria - 0; Metazoa - 724; Fungi - 214;
Plants - 535; Viruses - 0; Other Eukaryotes - 204 (source:
NCBI BLink)."
/db_xref="TAIR:AT3G49390"
/db_xref="Araport:AT3G49390"
intron_pos 144:0 (1/9)
intron_pos 180:0 (2/9)
intron_pos 195:0 (3/9)
intron_pos 219:1 (4/9)
intron_pos 257:0 (5/9)
intron_pos 277:0 (6/9)
intron_pos 293:0 (7/9)
intron_pos 315:0 (8/9)
intron_pos 335:2 (9/9)
BEGIN
1 MAVAENAGVK VDSSGQNLDN NNTAASATET TKPPCPDDDQ SPKSDSSTPL TIDSTPETDD
61 RINETAQKVQ TLNGFSGNGE RDNNGEIKDL ADAFSKLNPM AQEFVPPSLA RSQSGVLRNG
121 LGFTNNFAAP PKLADGNDHF PRRRRSFGQG KRRMNKRTSL AQKDDVIRRT VYVSDIDQQV
181 TEENLAGVFI NCGQVVDCRV CGDPNSVLRF AFIEFTNEEG ARAALSMSGT VLGFYPLKVL
241 PSKTAIAPVN PTFLPRSEDE REMCVRTVYC TNIDKRITQI DLKGFFEMLC GEVHRLRLGD
301 YHHQTRIAFV EFAMAESAIA ALHCSGIVLG ALPIRVSPSK TPVRPHFPRA EFK
//