LOCUS AEE78531.1 539 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Ypt/Rab-GAP domain of gyp1p superfamily
protein protein.
ACCESSION CP002686-6804
PROTEIN_ID AEE78531.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G49350"
/inference="Similar to RNA sequence,
EST:INSD:ES137435.1,INSD:ES016662.1,INSD:AU228908.1,
INSD:EL231315.1,INSD:EG422909.1,INSD:BP834007.1,
INSD:ES057307.1,INSD:ES194588.1,INSD:ES051243.1,
INSD:ES215776.1,INSD:AI997756.1,INSD:EG422907.1,
INSD:EH882748.1,INSD:BP649019.1,INSD:EL993995.1,
INSD:ES022895.1,INSD:EG487848.1,INSD:AV547631.1,
INSD:BP813900.1,INSD:EG467480.1,INSD:BP598320.1,
INSD:BP606683.1,INSD:EG467481.1,INSD:EL250099.1,
INSD:ES144668.1,INSD:EG487861.1,INSD:AU237814.1,
INSD:EH855666.1,INSD:BP788957.1,INSD:BP668987.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK229325.1,INSD:BT023442.1"
/note="Ypt/Rab-GAP domain of gyp1p superfamily protein;
FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN:
regulation of Rab GTPase activity; LOCATED IN:
intracellular, chloroplast; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST
Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain
of gyp1p superfamily protein (TAIR:AT5G24390.1); Has 4289
Blast hits to 3657 proteins in 225 species: Archae - 0;
Bacteria - 0; Metazoa - 2316; Fungi - 775; Plants - 693;
Viruses - 0; Other Eukaryotes - 505 (source: NCBI BLink)."
/db_xref="TAIR:AT3G49350"
/db_xref="Araport:AT3G49350"
intron_pos 53:2 (1/4)
intron_pos 99:0 (2/4)
intron_pos 115:2 (3/4)
intron_pos 133:2 (4/4)
BEGIN
1 MKALRRIQTT SSSSNPSSPL SSPPSSSSSS SWIQIRSALF VVASSSPASC SDRPRLKSPW
61 SRRKRKRPLR PQQWKRFFTP DGRLRNGGVD LLKKVRSRGI EPSIRLEVWP FLLGLYGFNS
121 SKEERVTIRN RRRKEYERLR RQCKRLQKHN NGTRKLYNGS ETIQDEYDWP RVQDTDSSCS
181 DEVVSARESL SSDEDITEDI GYMSEVSCTV ERDDGSSSRR ITNATISTLN SESSDSDSSD
241 ESEVVQVFQS SATPDVNSTY PASSSIPRTE EDFVTWQRII RLDAVRADSE WTSYSPSQAV
301 ISEDRACRAA EAVGLKDYNH LEPYKIFQAA RLVAVLEAYA LYDPDIGYCQ GMSDLLSPIL
361 SVIPDDHEVF WCFVGFMKKA RHNFRLDEVG IRRQLNIVSK IIKSKDSQLY RHLEKLQAED
421 CFFVYRMVVV MFRRELTLDQ TLCLWEVMWA DQAAIRAGMG KSAWSRIRQR APPTDDLVLY
481 AIAASVLQRR KRIIERYNSM DEILRECQSM AGQLDVWKLL DDAHDLVVTL HTKIEHSFS
//