LOCUS AEE78472.1 600 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana single-stranded DNA endonuclease
family protein protein.
ACCESSION CP002686-6726
PROTEIN_ID AEE78472.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G48900"
/gene_synonym="AtSEND1"
/gene_synonym="SEND1"
/inference="Similar to RNA sequence, EST:INSD:AV815134.1"
/note="single-stranded DNA endonuclease family protein;
FUNCTIONS IN: chromatin binding, DNA binding, catalytic
activity, nuclease activity; INVOLVED IN: DNA repair,
chromatin assembly or disassembly; LOCATED IN: chromatin,
nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED
DURING: F mature embryo stage, petal differentiation and
expansion stage, E expanded cotyledon stage, D bilateral
stage; CONTAINS InterPro DOMAIN/s: XPG N-terminal
(InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad
(InterPro:IPR006084), Chromo domain-like
(InterPro:IPR016197), 5'-3' exonuclease, C-terminal
subdomain (InterPro:IPR020045), Chromo domain
(InterPro:IPR000953), XPG/RAD2 endonuclease
(InterPro:IPR006086); BEST Arabidopsis thaliana protein
match is: 5'-3' exonuclease family protein
(TAIR:AT1G01880.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink)."
/db_xref="TAIR:AT3G48900"
/db_xref="Araport:AT3G48900"
intron_pos 23:2 (1/13)
intron_pos 76:1 (2/13)
intron_pos 97:0 (3/13)
intron_pos 139:2 (4/13)
intron_pos 157:0 (5/13)
intron_pos 181:1 (6/13)
intron_pos 206:0 (7/13)
intron_pos 226:0 (8/13)
intron_pos 280:1 (9/13)
intron_pos 313:2 (10/13)
intron_pos 341:1 (11/13)
intron_pos 375:0 (12/13)
intron_pos 420:2 (13/13)
BEGIN
1 MGVKYLWDVL EPCKKTFPLD HLQNKRVCVD LSCWMVELHK VNKSYCATKE KVYLRGFFHR
61 LRALIALNCS IILVSDGAIP GIKVPTYKRR LKARFEIADD GVEPSKETSL KRNMGSEFSC
121 IIKEAKVIAS TLGILCLDGI EEAEAQCALL NSESLCDACF SFDSDIFLFG AKTVYREICL
181 GEGGYVVCYE MDDIKKKLGL GRNSLIALAL LLGSDYSQGV RGLRQEKACE LVRSIGDNVI
241 LEKVASEGLS FAEKPRKSKK QVRPSVCSKK GTLPLVVING NNRDPERLEE IKQVIDAFMN
301 PKCHQADSNT VSRALAEFSF QRTKLQEICH QFFEWPPEKT DEYILPKVAE RNLRRFANLQ
361 SRSTEVEVNL PLHKPQMPEK CPVSEIIKTR KVQGRECFEV SWNDLEGLES SIVPADLVER
421 ACPEKIIEFK EKMAAKKKKP KPKQKQKETS SPTKSSSLVE LSLELQHLDL NSTSLVSRST
481 LEEAEQENEQ QNSKKHDYLR LIDSPDRENC NNAWSNRDRL GVGMSSFPLY PETEVIDLIS
541 PCPEARSRSV SRSYQEQKSH DHQLETVIEL SDSETDDEEH CKKARELRIF LQNIRKDIIL
//