LOCUS AEE78442.1 647 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana XH/XS domain-containing protein protein.
ACCESSION CP002686-6688
PROTEIN_ID AEE78442.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="IDN2"
/locus_tag="AT3G48670"
/gene_synonym="INVOLVED IN DE NOVO 2"
/gene_synonym="RDM12"
/gene_synonym="RNA-DIRECTED DNA METHYLATION 12"
/inference="Similar to RNA sequence,
EST:INSD:EL045252.1,INSD:ES002729.1,INSD:CB261973.1,
INSD:AV564671.1,INSD:AV795810.1,INSD:EG489586.1,
INSD:ES058643.1,INSD:EH898951.1,INSD:ES003127.1,
INSD:BE522925.1,INSD:BP833782.1,INSD:EL999828.1,
INSD:ES119027.1,INSD:EH882876.1,INSD:BE530184.1,
INSD:BE526068.1,INSD:DR363795.1,INSD:ES095814.1,
INSD:AV548574.1,INSD:BP561638.1,INSD:BP647571.1,
INSD:EH869381.1,INSD:EG514403.1,INSD:AV548588.1,
INSD:EL981197.1,INSD:ES018269.1,INSD:CB262887.1,
INSD:EH918010.1,INSD:AV555934.1,INSD:EL193899.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX826202.1,INSD:AY065184.1,INSD:BT000136.1"
/note="INVOLVED IN DE NOVO 2 (IDN2); FUNCTIONS IN:
molecular_function unknown; INVOLVED IN: response to
cadmium ion, chromatin silencing, DNA methylation; LOCATED
IN: cellular_component unknown; EXPRESSED IN: root;
CONTAINS InterPro DOMAIN/s: Domain of unknown function XS
(InterPro:IPR005380), Domain of unknown function XH
(InterPro:IPR005379), Domain of unknown function, putative
Zinc finger, XS/XH (InterPro:IPR005381); BEST Arabidopsis
thaliana protein match is: XH/XS domain-containing protein
(TAIR:AT3G12550.2); Has 76122 Blast hits to 43343 proteins
in 2243 species: Archae - 1068; Bacteria - 10039; Metazoa
- 36284; Fungi - 4878; Plants - 2932; Viruses - 220; Other
Eukaryotes - 20701 (source: NCBI BLink)."
/db_xref="TAIR:AT3G48670"
/db_xref="Araport:AT3G48670"
intron_pos 133:1 (1/5)
intron_pos 374:0 (2/5)
intron_pos 404:0 (3/5)
intron_pos 500:0 (4/5)
intron_pos 570:0 (5/5)
BEGIN
1 MGSTVILSSD DEDSDISESE MDEYGDKMYL NLKGGKLKVR LSPQAFICPY CPNKKKTSFQ
61 YKDLLQHASG VGNSNSDKRS AKEKASHLAL VKYLQQDLAD SASEAEPSSK RQKNGNPIQD
121 CDHDEKLVYP WKGIVVNIPT TKAQDGRSAG ESGSKLRDEY ILRGFNPTRV RPLWNYLGHS
181 GTAIVEFNKD WNGLHNGLLF DKAYTVDGHG KKDWLKKDGP KLGLYGWIAR ADDYNGNNII
241 GENLRKTGDL KTIAELTEEE ARKQELLVQN LRQLVEEKKK DMKEIEELCS VKSEELNQLM
301 EEKEKNQQKH YRELNAIQER TMSHIQKIVD DHEKLKRLLE SERKKLEIKC NELAKREVHN
361 GTERMKLSED LEQNASKNSS LELAAMEQQK ADEEVKKLAE DQRRQKEELH EKIIRLERQR
421 DQKQAIELEV EQLKGQLNVM KHMASDGDAE VVKEVDIIFK DLGEKEAQLA DLDKFNQTLI
481 LRERRTNDEL QEAHKELVNI MKEWNTNIGV KRMGELVTKP FVDAMQQKYC QQDVEDRAVE
541 VLQLWEHYLK DSDWHPFKRV KLENEDREVE VIDDRDEKLR ELKADLGDGP YNAVTKALLE
601 INEYNPSGRY ITTELWNFKA DKKATLEEGV TCLLDQWEKA KRKRGMA
//