LOCUS AEE78434.1 234 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana nuclear factor Y, subunit C1 protein.
ACCESSION CP002686-6677
PROTEIN_ID AEE78434.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="NF-YC1"
/locus_tag="AT3G48590"
/gene_synonym="''nuclear factor Y"
/gene_synonym="ATHAP5A"
/gene_synonym="HAP5A"
/gene_synonym="nuclear factor Y"
/gene_synonym="subunit C1"
/gene_synonym="subunit C1''"
/inference="Similar to RNA sequence,
EST:INSD:BP866778.1,INSD:ES205688.1,INSD:EL968422.1,
INSD:EH898062.1,INSD:EL139783.1,INSD:ES039301.1,
INSD:EH967350.1,INSD:EG527178.1,INSD:AV785091.1,
INSD:AW004260.1,INSD:EL968331.1,INSD:EL229436.1,
INSD:ES142210.1,INSD:AV823987.1,INSD:EL221837.1,
INSD:EL127174.1,INSD:ES160134.1,INSD:EH928367.1,
INSD:ES134471.1,INSD:EL254999.1,INSD:DR751355.1,
INSD:DR373388.1,INSD:EH850636.1,INSD:EH881809.1,
INSD:EH873645.1,INSD:EH905635.1,INSD:EL030777.1,
INSD:ES028011.1,INSD:T43909.1,INSD:EL305728.1,
INSD:EL092073.1,INSD:EH887213.1,INSD:DR316326.1,
INSD:EH863470.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY092997.1,INSD:BX823847.1,INSD:BX842218.1,
INSD:BT001206.1,INSD:BX826084.1,INSD:AY086120.1,
INSD:Y13726.1"
/note="''nuclear factor Y, subunit C1'' (NF-YC1); CONTAINS
InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal
histone (InterPro:IPR003958), Histone-fold
(InterPro:IPR009072); BEST Arabidopsis thaliana protein
match is: nuclear factor Y, subunit C4 (TAIR:AT5G63470.2);
Has 1348 Blast hits to 1348 proteins in 229 species:
Archae - 0; Bacteria - 0; Metazoa - 449; Fungi - 353;
Plants - 430; Viruses - 0; Other Eukaryotes - 116 (source:
NCBI BLink)."
/db_xref="TAIR:AT3G48590"
/db_xref="Araport:AT3G48590"
intron_pos 234:2 (1/1)
BEGIN
1 MDTNNQQPPP SAAGIPPPPP GTTISAAGGG ASYHHLLQQQ QQQLQLFWTY QRQEIEQVND
61 FKNHQLPLAR IKKIMKADED VRMISAEAPI LFAKACELFI LELTIRSWLH AEENKRRTLQ
121 KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG
181 GMMIGRPAMD PNGVYVQPPS QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG
//