LOCUS AEE78345.1 1607 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Ubiquitin carboxyl-terminal hydrolase-
related protein protein.
ACCESSION CP002686-6558
PROTEIN_ID AEE78345.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G47910"
/inference="Similar to RNA sequence,
EST:INSD:EH827285.1,INSD:ES076224.1,INSD:EH966581.1,
INSD:BP781027.1,INSD:ES102053.1,INSD:EL319600.1,
INSD:EL058202.1,INSD:EH956235.1,INSD:EG418464.1,
INSD:EL126811.1,INSD:ES033592.1,INSD:ES131297.1,
INSD:AV527482.1,INSD:AU228596.1,INSD:AV554895.1,
INSD:ES026486.1,INSD:ES187911.1,INSD:ES037610.1,
INSD:EH852545.1,INSD:EH903431.1,INSD:ES012745.1,
INSD:EL236828.1,INSD:EG504930.1,INSD:EL188957.1,
INSD:ES039838.1,INSD:ES018839.1,INSD:AU237523.1,
INSD:ES027320.1,INSD:AV547177.1,INSD:EL997668.1,
INSD:ES164883.1,INSD:EL133498.1,INSD:ES000934.1,
INSD:ES077795.1,INSD:EL008440.1,INSD:ES059751.1,
INSD:EL017044.1,INSD:EL985711.1,INSD:ES113516.1,
INSD:ES181064.1,INSD:AA651029.1,INSD:ES120436.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BT029483.1,INSD:BX823699.1,INSD:AK229030.1"
/note="Ubiquitin carboxyl-terminal hydrolase-related
protein; FUNCTIONS IN: ubiquitin thiolesterase activity,
zinc ion binding; INVOLVED IN: ubiquitin-dependent protein
catabolic process; LOCATED IN: intracellular; EXPRESSED
IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF627 (InterPro:IPR006866), Peptidase
C19, ubiquitin carboxyl-terminal hydrolase 2
(InterPro:IPR001394), Zinc finger, C2H2-type
(InterPro:IPR007087), Protein of unknown function DUF629
(InterPro:IPR006865); BEST Arabidopsis thaliana protein
match is: Ubiquitin carboxyl-terminal hydrolase-related
protein (TAIR:AT3G47890.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink)."
/db_xref="TAIR:AT3G47910"
/db_xref="Araport:AT3G47910"
intron_pos 864:0 (1/14)
intron_pos 907:0 (2/14)
intron_pos 971:0 (3/14)
intron_pos 987:2 (4/14)
intron_pos 1092:0 (5/14)
intron_pos 1134:1 (6/14)
intron_pos 1201:1 (7/14)
intron_pos 1233:1 (8/14)
intron_pos 1294:0 (9/14)
intron_pos 1366:0 (10/14)
intron_pos 1458:0 (11/14)
intron_pos 1507:1 (12/14)
intron_pos 1552:0 (13/14)
intron_pos 1581:0 (14/14)
BEGIN
1 MGQKKKTSAS RSKQPPSSTA VTVVEVEPSE ISACSFNDGG FSGPDANGEP LDSSVVKLEC
61 EKALKSFGRG SYNKAIRLIK DSCSRHQDSA LIHRVQGTIC VKVAAVYEDL ATKQKYLRNA
121 IESARKAVEL SPNSIEFGHF YANLLYEAAN EGKREYEEVV QECHRALSIE YPIDPARESL
181 QDETQLKILT PEARIAHFQD ELRSLIQKSN IYSLSTWMQT LGNGEEKFRL IPLRRMAEDP
241 IESNLIQSRR PNEIKKSTKT NEERRKEIEV RVAAHRLLQQ KSESSPSENV EAVNNKGSDS
301 ALAAGPRSGE RRKHGNARKN GSTADRRDRV RSYWDSLSKE MKKEFLRVKF SDLKSHFSGS
361 KDGQAYEIVS EALSFCEANK TWRFWACCRC SQNFIESEAH MHHIVQAHMG NVLPKMQMVL
421 PQIVDTERID MLFKSPWKPL DLSATLKLLR SQQKIQNSEF DEFHSGDNMD GGDDCFKDAW
481 NDTTPDGDTC NGWNENESEE EVKLSIAFPP PDGWPISDDP ERAKLLEKIR AAFEQLIRHK
541 YLAASHHDKV IQFTLDELQN LPSVSQFLNR GLNKSPLCIC FLGASHLSKI LKFLQDLSQA
601 CGLSRYSEQS NPHDEINFGD LGREVTEEIL LDSEDSCLLM DEKLLGTECI QEKYMGSAFN
661 NVTIASSGDI ANGNDVSSGA DGFLSWIFTG PSSEEQVVSW MRTKEDKTNQ GLEIMQHLEK
721 EFYHLQNLCE RKCEHLSYEG ALQTVEDLCL EEGRKRETSA EFTHESYETV LRKRREELNE
781 SDHELLFISS RFELDAITNV LKDAETLNHN QFGYEESYGC TSSQLRDLES GEADEWGIKD
841 SLHEADSFIE IAIQKQKEQL SAELSRIDAQ MMRNVTGMQQ LELKLGPVSS NDYQIVLLPL
901 VKSYMRAHLE ALAEKDATEK SDAAREALLV ELALDSKKEA RGRNDNSKNT LEKSKDKKKI
961 KDTRKVKDMK ATIGSDHRSN ADSVEHSPLP VAPVGDHSEA DIVSEAVEAL KEEEEEYKRQ
1021 IELEEEERKL EKTLEYQRRI EDEAKEKHMA EQQKKYSSSV PMNVAKTVYN GCTDNEVDYL
1081 VLQGQEKSIN QEKRNGRLDD LEGASVNTNG VFPSTNHSAI SDTAKVQNVK SQKVVPNGTA
1141 MQAGIFQSDQ RTGRRTRRQK ASNKLADGKY PVTPPETENS KSQLSGTNGE RHSETLRNNG
1201 DVGTKTLRQL QAEDDDEERF QADMQRAVLQ SLDVYQGGRN MASCLRTPLE VNNDGGLSDD
1261 TMESRSSTGV TIFGTGLQNE VGEYNCFLNV IIQSLWNLEL FRAEFLRSST REHHHVGDPC
1321 VVCSLYEIFT ALSAASSEKQ NEPVAPSSLR IALSNLYPDS SFFQEAQMND ASEVLAVIFD
1381 CLHRSFAQSS SVSDVDSSDS NCTGSWDCAN RTCIAHSLFG MDIFEQLNCY SCGLESRHLK
1441 YTSFFHNINA SALRTMKVTC AENSFDELLN LVEMNHQLAC DPETGGCGKL NHIHHILTTP
1501 PHVFTTVLGW QNTCETVEDI AATLAALNTE IDISIMYRGL DPKSTYSLVS VVCYYGQHYH
1561 CFAHSREHDQ WIMYDDKTVK VIGSWIDVLS MCERGHLQPQ VLLYERR
//