LOCUS AEE78297.1 288 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RING/FYVE/PHD zinc finger superfamily
protein protein.
ACCESSION CP002686-6488
PROTEIN_ID AEE78297.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G47550"
/inference="Similar to RNA sequence,
EST:INSD:DR249251.1,INSD:ES148248.1,INSD:BP613329.1,
INSD:AV562295.1,INSD:DR377106.1,INSD:EH802432.1,
INSD:ES040186.1,INSD:BP646807.1,INSD:ES183047.1,
INSD:DR249250.1,INSD:ES051984.1,INSD:ES059887.1,
INSD:AV789247.1,INSD:BP663828.1,INSD:EG441851.1,
INSD:ES044451.1,INSD:BP818032.1,INSD:BP625946.1,
INSD:EH914105.1,INSD:BP805055.1,INSD:AV526231.1,
INSD:BE520199.1,INSD:AV783546.1,INSD:EL109047.1,
INSD:ES131244.1,INSD:DR378752.1,INSD:BE530527.1,
INSD:DR249246.1,INSD:DR249254.1,INSD:BP858139.1,
INSD:ES181129.1,INSD:T43097.1,INSD:EL285272.1,
INSD:EL266937.1,INSD:DR249243.1,INSD:EH896559.1,
INSD:AV549698.1,INSD:AV825002.1,INSD:DR249252.1,
INSD:EL064121.1,INSD:EG484503.1,INSD:EH953401.1,
INSD:EL071153.1,INSD:ES170165.1,INSD:AV532912.1,
INSD:BP619469.1,INSD:ES066015.1,INSD:EH925793.1,
INSD:ES021284.1,INSD:EL267114.1,INSD:BE529329.1,
INSD:DR376434.1,INSD:DR260720.1,INSD:EL047103.1,
INSD:BE520200.1,INSD:AI992957.1,INSD:DR249244.1,
INSD:DR249247.1,INSD:BP785534.1,INSD:DR249249.1,
INSD:EH827295.1,INSD:ES078070.1,INSD:ES099312.1,
INSD:ES178176.1,INSD:BP780126.1,INSD:EL338096.1,
INSD:DR249248.1,INSD:DR249253.1,INSD:EH802855.1,
INSD:BE526175.1,INSD:EH932364.1,INSD:AV820165.1,
INSD:AV557743.1,INSD:AV542461.1,INSD:BP611771.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX823484.1,INSD:AK226509.1"
/note="RING/FYVE/PHD zinc finger superfamily protein;
FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to
salt stress; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3675 (InterPro:IPR022143),
Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc
finger, RING-CH-type (InterPro:IPR011016); BEST
Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc
finger superfamily protein (TAIR:AT5G62460.1); Has 1874
Blast hits to 1869 proteins in 210 species: Archae - 0;
Bacteria - 0; Metazoa - 852; Fungi - 126; Plants - 623;
Viruses - 31; Other Eukaryotes - 242 (source: NCBI
BLink)."
/db_xref="TAIR:AT3G47550"
/db_xref="Araport:AT3G47550"
intron_pos 93:0 (1/6)
intron_pos 117:0 (2/6)
intron_pos 138:2 (3/6)
intron_pos 190:0 (4/6)
intron_pos 218:0 (5/6)
intron_pos 248:0 (6/6)
BEGIN
1 MADHLSLCTD RLITSESLDS EKDSDSSGES SYRPQGTDLA SSSVNETEVP REYYAVADEE
61 EPLLQSVECR ICQEEDSTKN LEAPCACNGS LKYAHRKCVQ RWCNEKGDIT CEICHQPYQH
121 GYTAPPPPPP DETIIHIGDD WENGVPLDLT DPRILAMAAA ERHFLEADYD EYSENNSSGA
181 AFCRSAALIL MALLLLRDAL NLTTNPDDED DPTAFFSLFL LRAAGFLLPC YIMAWAIGIL
241 QRRRQRQEAA ALAAAEVTFM IHGGGPQRRG LHFAVAPQPP ISNVPTPV
//