LOCUS AEE78275.1 599 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana cytidine/deoxycytidylate deaminase
family protein protein.
ACCESSION CP002686-6461
PROTEIN_ID AEE78275.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="PHS1"
/locus_tag="AT3G47390"
/gene_synonym="PHOTOSENSITIVE 1"
/gene_synonym="pyrimidine reductase"
/gene_synonym="PyrR"
/inference="Similar to RNA sequence,
EST:INSD:EL088827.1,INSD:ES098771.1,INSD:ES076577.1"
/note="PHOTOSENSITIVE 1 (PHS1); CONTAINS InterPro
DOMAIN/s: Conserved hypothetical protein CHP02464
(InterPro:IPR012816), CMP/dCMP deaminase, zinc-binding
(InterPro:IPR002125), Cytidine deaminase-like
(InterPro:IPR016193), Riboflavin-specific deaminase,
C-terminal (InterPro:IPR011549), Bacterial bifunctional
deaminase-reductase, C-terminal (InterPro:IPR002734),
Riboflavin biosynthesis protein RibD (InterPro:IPR004794);
BEST Arabidopsis thaliana protein match is:
Cytidine/deoxycytidylate deaminase family protein
(TAIR:AT4G20960.1); Has 7611 Blast hits to 7611 proteins
in 2242 species: Archae - 202; Bacteria - 4931; Metazoa -
21; Fungi - 157; Plants - 91; Viruses - 17; Other
Eukaryotes - 2192 (source: NCBI BLink)."
/db_xref="TAIR:AT3G47390"
/db_xref="Araport:AT3G47390"
intron_pos 120:0 (1/8)
intron_pos 165:0 (2/8)
intron_pos 198:1 (3/8)
intron_pos 240:1 (4/8)
intron_pos 345:0 (5/8)
intron_pos 385:0 (6/8)
intron_pos 437:1 (7/8)
intron_pos 514:0 (8/8)
BEGIN
1 MALSFRISSS SPLICRATLS NGDNSRNYHT TDAAFIRRAA DLSEMSAGLT SPHPNFGCVI
61 ATSSGKVAGE GYLYAQGTKP AEALAVEAAG EFSRGATAYL NMEPGDCHGD HTAVSALVQA
121 GIERVVVGIR HPLQHLRGSA IRELRSHGIE VNVLGEDFES KVLEDARKSC LLVNAPLIHR
181 ACSRVPFSVL KYAMTLDGKI AASSGHAAWI SSKLSRTRVF ELRGGSDAVI VGGNTVRQDD
241 PRLTARHGQG HTPTRIVMTQ SLDLPEKANL WDVSEVSTIV VTQRGARKSF QKLLASKGVE
301 VVEFDMLNPR EVMEYFHLRG YLSILWECGG TLAASAISSS VIHKVVAFVA PKIIGGSKAP
361 SPVGDLGMVE MTQALNLIDV CYEQVGPDML VSGFLQPIPD LLPVIPSEDA TVEIDPSVDP
421 FEPSIIFFYK TWDLYGMWNI TIRYHTTVHV KWYLALSKKH NLLILHPKTL KANKFVGVEN
481 PKAYDCVEKI RTARSPEEAA LIGRSTLRQK PELVRNDWED VKIEVMYKAL KCKFSTYPHL
541 KSMLLSTIGT VLVEASPHDL FWGGGREGEG LNYLGRLLMQ LRSEYLGESS VSAEKTSSA
//