LOCUS AEE78245.1 352 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA recognition motif (RRM)-containing
protein protein.
ACCESSION CP002686-6426
PROTEIN_ID AEE78245.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G47120"
/inference="Similar to RNA sequence,
EST:INSD:DR360566.1,INSD:DR379008.1,INSD:ES211377.1,
INSD:EG468743.1,INSD:BP654234.1,INSD:ES204531.1,
INSD:EH952283.1,INSD:ES051875.1,INSD:AI996963.1,
INSD:BP849714.1,INSD:AV801810.1,INSD:EG468777.1,
INSD:BP621217.1,INSD:BP615214.1,INSD:EG468778.1,
INSD:EL009760.1,INSD:BP792412.1,INSD:DR360565.1,
INSD:EL277834.1,INSD:EH879231.1,INSD:EG468742.1,
INSD:ES065581.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BT002472.1,INSD:BT010369.1"
/note="RNA recognition motif (RRM)-containing protein;
FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion
binding, nucleic acid binding; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc
finger, CCCH-type (InterPro:IPR000571), RNA recognition
motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding,
alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis
thaliana protein match is: glycine-rich RNA-binding
protein 3 (TAIR:AT5G61030.1); Has 201898 Blast hits to
124021 proteins in 4668 species: Archae - 159; Bacteria -
19385; Metazoa - 64482; Fungi - 8819; Plants - 85595;
Viruses - 264; Other Eukaryotes - 23194 (source: NCBI
BLink)."
/db_xref="TAIR:AT3G47120"
/db_xref="Araport:AT3G47120"
intron_pos 58:2 (1/4)
intron_pos 95:1 (2/4)
intron_pos 158:0 (3/4)
intron_pos 208:0 (4/4)
BEGIN
1 MNPLTQVKNL QKINARESDL GISDEASWHA KYKNSAYVYV GGIPFDLTEG DLLAVFSQYG
61 EIVDVNLIRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA LVLGRTIKVD HCGAYKKHEE
121 EDEETRRQNR EARGVCRAFQ RGECTRGDSC KFSHDEKRAA NTGWGHEEDR SSKWDHDKNR
181 EGRGVCRAFQ RGECTRGDSC KFSHDEKRAA TTGWGHEEDR SSKWDQDKLN GAKKGGTSFG
241 NRGDFKPDVE EKSYRGRGDG DASYGRPKER ERVDREDMGP RSRDAYDMKE QKRSGRYDNA
301 YSRRHNDEID YVREDKGSRA QDWEKRKAES RRDRNDREEK DRDSLRREDR RR
//