LOCUS AEE78224.1 1347 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA helicase, ATP-dependent, SK12/
DOB1 protein protein.
ACCESSION CP002686-6391
PROTEIN_ID AEE78224.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G46960"
/inference="Similar to RNA sequence,
EST:INSD:EL193602.1,INSD:ES049387.1,INSD:CA781588.1,
INSD:EH809973.1,INSD:ES204102.1,INSD:DR355352.1,
INSD:DR379974.1,INSD:EH903142.1,INSD:AV529233.1,
INSD:EH817212.1,INSD:Z26060.1,INSD:ES108423.1,
INSD:ES055834.1,INSD:AV548396.1,INSD:ES167017.1,
INSD:EH901737.1,INSD:ES005757.1,INSD:ES013021.1,
INSD:AV546387.1,INSD:AV791050.1,INSD:ES067195.1,
INSD:ES134049.1,INSD:EH916267.1,INSD:EL032764.1,
INSD:EH803586.1"
/note="RNA helicase, ATP-dependent, SK12/DOB1 protein;
FUNCTIONS IN: hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides, helicase
activity, ATP-dependent helicase activity, ATP binding,
nucleic acid binding; INVOLVED IN: biological_process
unknown; LOCATED IN: vacuole; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 14 growth stages; CONTAINS
InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type,
N-terminal (InterPro:IPR011545), DSH, C-terminal
(InterPro:IPR012961), DEAD-like helicase, N-terminal
(InterPro:IPR014001), RNA helicase, ATP-dependent,
SK12/DOB1 (InterPro:IPR016438), DNA/RNA helicase,
C-terminal (InterPro:IPR001650), Helicase, superfamily
1/2, ATP-binding domain (InterPro:IPR014021); BEST
Arabidopsis thaliana protein match is: RNA helicase,
ATP-dependent, SK12/DOB1 protein (TAIR:AT1G59760.1); Has
10417 Blast hits to 7271 proteins in 1110 species: Archae
- 777; Bacteria - 3025; Metazoa - 1455; Fungi - 1476;
Plants - 602; Viruses - 48; Other Eukaryotes - 3034
(source: NCBI BLink)."
/db_xref="TAIR:AT3G46960"
/db_xref="Araport:AT3G46960"
intron_pos 46:0 (1/22)
intron_pos 132:0 (2/22)
intron_pos 219:0 (3/22)
intron_pos 242:0 (4/22)
intron_pos 268:1 (5/22)
intron_pos 332:0 (6/22)
intron_pos 368:0 (7/22)
intron_pos 402:0 (8/22)
intron_pos 469:0 (9/22)
intron_pos 506:0 (10/22)
intron_pos 528:2 (11/22)
intron_pos 652:0 (12/22)
intron_pos 704:0 (13/22)
intron_pos 741:0 (14/22)
intron_pos 759:0 (15/22)
intron_pos 845:0 (16/22)
intron_pos 881:2 (17/22)
intron_pos 933:0 (18/22)
intron_pos 1084:1 (19/22)
intron_pos 1156:0 (20/22)
intron_pos 1235:2 (21/22)
intron_pos 1278:0 (22/22)
BEGIN
1 MNKVEAGNEL GFRVGFSGHG GHLRVEPFYT AERDDALNSL PDFVSPPAFA KETKESIKKH
61 IEEKYLIPRL EPDQFSAEKA ENQWDFDWFS RVKMPLQPSL PRSVVVPTWE LPFRRQKEDT
121 ENGAWEPKSV EVDLSEQMYG DQDSGFFPRM VGPPKDFLRG SVNNRPFRPG GLEDSQSSER
181 VLPEGVSSGQ WVQELLNGGP AQTVPPSFKQ SLDLGDLMPY PQTWSVYEDH SSHGNASDEN
241 SSKLSIQFDD LFKKAWEEDT FSELEGDDHT AGSESPKAEA EPDAKASISN EVSKGLETDV
301 TVLDEILSSA KTAIMSEEAV TGSSDKQLRK EGWATKGDSQ DIADRFYELV PDMAIEFPFE
361 LDNFQKEAIC CLEKGESVFV AAHTSAGKTV VAEYAFALAT KHCTRAVYTA PIKTISNQKY
421 RDFCGKFDVG LLTGDVSIRP EASCLIMTTE ILRSMLYRGA DIIRDIEWVI FDEVHYVNDV
481 ERGVVWEEVI IMLPRHINFV LLSATVPNTF EFADWIGRTK QKEIRVTGTT KRPVPLEHCL
541 FYSGELYKVC ENEVFLSKGI KDAKDSQKKK NSNAVSVAPK QQMGSSAHQD GSKSQKHEAH
601 SRGKQNKHSS VKDVGKSSYS GNSQNNGAFR RSAASNWLLL INKLSKMSLL PVVVFCFSKN
661 YCDRCADALT GTDLTSSSEK SEIRVFCDKA FSRLKGSDRN LPQVLRLQSL LHRGIGVHHA
721 GLLPIVKEVV EMLFCRGVIK VLFSTETFAM GVNAPARTVV FDALRKFDGK EFRQLLPGEY
781 TQMAGRAGRR GLDKTGTVVV MCRDEVPDES DLRRVIVGSA TRLESQFRLT YIMILHLLRV
841 EELKVEDMLK RSFAEFHAQK KLPEKQQLLM IKRSLPTKHI ECIKGEPAIE DYYDMYMEAN
901 EYNNKMSEAV MQSPYAQSFL VQGRVVVMKS GMGIDNLLGI VLKGPSNTNR QYVVLVIKSE
961 IPPPEKNMVS IGKKSSDPSQ GYFIAPKSKR GFEEEFYTKP SSRKGPVVIK IELPYHGVAA
1021 GVGYEVKGFD NKEFLCICDS KIKIDQVRLL EDGNKAAFSQ TVQQLLDLKS DGNKFPPALD
1081 PVKDLKLKDA ELVETYYKWT NLLQKMSMNK CHGCVKLEEH MKLAREIKKH KTDLKDLEFQ
1141 MSDEALLQMP AFQGRIDVLK NIGCIDDDLV VQIKGRVACE MNSGEELICT VCLFENQFEE
1201 LEPEEAVAIM SAFVFQQKNT SAPTLTPKLA KAKQRLYDTA IRLGELQAQY NLQIDPEEYA
1261 QENLKFGLVE VVYEWAKGTP FAEICELTDV PEGLIVRTIV RLDETCREFK NAAAIMGNSA
1321 LHKKMDAASN AIKRDIVFAA SLYVTGV
//