LOCUS AEE78186.1 323 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Homeodomain-like superfamily protein protein.
ACCESSION CP002686-6343
PROTEIN_ID AEE78186.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="PCL1"
/locus_tag="AT3G46640"
/gene_synonym="LUX"
/gene_synonym="LUX ARRHYTHMO"
/gene_synonym="PHYTOCLOCK 1"
/inference="Similar to RNA sequence,
EST:INSD:BP667307.1,INSD:ES143393.1,INSD:ES212228.1,
INSD:DR378327.1,INSD:Z34539.1,INSD:BP568208.1,
INSD:BP618841.1,INSD:ES104007.1,INSD:EL220076.1,
INSD:EL327352.1,INSD:ES101526.1,INSD:BP606184.1,
INSD:ES157689.1,INSD:EH939268.1,INSD:EL969992.1,
INSD:EL973350.1,INSD:BP828805.1,INSD:ES203086.1,
INSD:AV567667.1,INSD:ES140424.1,INSD:EH908369.1,
INSD:EL224797.1,INSD:EH854078.1,INSD:ES009518.1,
INSD:BP585271.1,INSD:EL985488.1,INSD:EL219648.1,
INSD:AU226353.1,INSD:BP868734.1,INSD:BP640266.1,
INSD:EH911493.1,INSD:EL113589.1,INSD:ES028700.1,
INSD:EL976745.1,INSD:BP645685.1,INSD:EH893890.1,
INSD:EL028475.1,INSD:ES193781.1,INSD:EL972438.1,
INSD:ES036096.1,INSD:EL999095.1,INSD:BP812720.1,
INSD:BP644311.1,INSD:EH994963.1,INSD:BP851536.2,
INSD:BP572530.1,INSD:AU235617.1,INSD:BP845608.1,
INSD:BP668607.1,INSD:EL273526.1,INSD:EL132190.1,
INSD:BP578626.1,INSD:BP594712.1,INSD:EL192928.1,
INSD:EL990996.1,INSD:EL231810.1,INSD:BP590960.1,
INSD:T46032.1,INSD:BP605994.1,INSD:AV566878.1,
INSD:BP652120.1,INSD:EL033286.1,INSD:BP653549.1,
INSD:Z30828.1,INSD:EL179713.1,INSD:EH955853.1,
INSD:BP846569.2,INSD:BP800778.1,INSD:DR750062.1,
INSD:DR255328.1,INSD:BP596719.1,INSD:ES192394.1,
INSD:ES185689.1,INSD:AA395375.1,INSD:EH960127.1,
INSD:ES199604.1,INSD:BP651022.1,INSD:EL978008.1,
INSD:BP627494.1,INSD:BP583872.1,INSD:ES036930.1,
INSD:EL251113.1,INSD:EH906263.1,INSD:ES003570.1,
INSD:EH806449.1,INSD:BP563962.1,INSD:BP858130.1,
INSD:BP819233.1,INSD:BP569693.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX822458.1,INSD:BT006425.1,INSD:AK227686.1"
/note="PHYTOCLOCK 1 (PCL1); CONTAINS InterPro DOMAIN/s:
Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding
(InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF
class (InterPro:IPR006447), HTH transcriptional regulator,
Myb-type, DNA-binding (InterPro:IPR017930),
Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis
thaliana protein match is: Homeodomain-like superfamily
protein (TAIR:AT5G59570.1); Has 1709 Blast hits to 1707
proteins in 80 species: Archae - 0; Bacteria - 29; Metazoa
- 20; Fungi - 11; Plants - 1622; Viruses - 0; Other
Eukaryotes - 27 (source: NCBI BLink)."
/db_xref="TAIR:AT3G46640"
/db_xref="Araport:AT3G46640"
BEGIN
1 MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI TPERSRTIQD
61 VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG SDSKKQKTSN GDGDDGGGVD
121 PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV
181 EGLTRENVAS HLQKYRLYLK RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV
241 GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGAFESNPYM
301 MQQNKFGSMA SYPSVGGGSA NEN
//