LOCUS AEE78177.1 547 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana TRF-like 1 protein.
ACCESSION CP002686-6326
PROTEIN_ID AEE78177.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="TRFL1"
/locus_tag="AT3G46590"
/gene_synonym="ATTRP2"
/gene_synonym="TRF-like 1"
/gene_synonym="TRP2"
/inference="Similar to RNA sequence,
EST:INSD:ES015321.1,INSD:BP789488.1,INSD:EL992748.1,
INSD:BP866331.1,INSD:EL104186.1,INSD:EL041034.1,
INSD:EG490962.1,INSD:BP862662.1,INSD:BP845632.1,
INSD:EG528235.1,INSD:BP846945.1,INSD:ES134477.1,
INSD:BX834854.1,INSD:ES040050.1,INSD:BP779415.1,
INSD:EH979193.1,INSD:EG490961.1,INSD:CB261886.1,
INSD:EL207795.1,INSD:EL168623.1,INSD:EL140396.1,
INSD:EH853130.1,INSD:AV825635.1,INSD:BP623715.1,
INSD:BP777676.1,INSD:AV829851.1,INSD:BP780348.1,
INSD:ES116925.1,INSD:F15179.1,INSD:EG522174.1,
INSD:EL338947.1,INSD:CF772942.1,INSD:BP851659.1,
INSD:BP798089.1,INSD:EL986976.1,INSD:ES120581.1,
INSD:EL142979.1,INSD:BP853013.1,INSD:EL978072.1,
INSD:EH825917.1,INSD:EH970808.1,INSD:EL080861.1,
INSD:DR354325.1,INSD:EH864781.1,INSD:BP862172.1,
INSD:AV808894.1,INSD:EL997118.1,INSD:BP779729.1,
INSD:ES046193.1,INSD:BP846947.1,INSD:EL257581.1,
INSD:EH934039.1,INSD:BP625464.1,INSD:BP791235.1,
INSD:ES182019.1,INSD:BP661336.1,INSD:AV824450.1,
INSD:EG528236.1,INSD:EL980135.1,INSD:BP587000.1,
INSD:ES043086.1,INSD:CB264010.1,INSD:AV786201.1,
INSD:ES034873.1,INSD:EH925196.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY395985.1,INSD:AY090966.1"
/note="TRF-like 1 (TRFL1); CONTAINS InterPro DOMAIN/s:
SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like
(InterPro:IPR009057), Ubiquitin supergroup
(InterPro:IPR019955), HTH transcriptional regulator,
Myb-type, DNA-binding (InterPro:IPR017930),
Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis
thaliana protein match is: telomeric repeat binding
protein 1 (TAIR:AT5G59430.3); Has 308 Blast hits to 292
proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 287; Viruses - 0; Other
Eukaryotes - 21 (source: NCBI BLink)."
/db_xref="TAIR:AT3G46590"
/db_xref="Araport:AT3G46590"
intron_pos 28:0 (1/8)
intron_pos 210:1 (2/8)
intron_pos 258:1 (3/8)
intron_pos 279:1 (4/8)
intron_pos 306:0 (5/8)
intron_pos 371:2 (6/8)
intron_pos 469:2 (7/8)
intron_pos 491:0 (8/8)
BEGIN
1 MVSHKVLEFG DDGYKLPAQA RAPRSLRKKR IYEKKIPGDD KMCAIDLLAT VAGSLLLESK
61 SPVNACLVVQ NTVKNEYPAD ENPVKAVPYS ESPSLFDNGK CGFSSVITNP NHLLVGDKVG
121 KEVEGFSSLG VSGDVKPDVV ASIGSNSSTE VGACGNGSPN ESRDDVNLFS RNDDDENFSG
181 YIRTRMTRPV PRIGDRRIRK ILASRHWKGD AKPWYCSKRS YYLHHHQRSY PIKKRKYFDS
241 VYDSNSDDYR LQGKTHKGSR TISSMKSRNA SFVSRDHHVK LRIKSFRVPE LFVEIPETAT
301 VGSLKRMVME AVTTILGDGL RVGLMVQGKK VRDDGKTLLQ TGISEENNHL DSLGFSLEPS
361 LETTPQPLLS SYLSDHACDD VTLCHDNALD SSHEPEPSPA DSFGKLGTSD HSRALIPVAS
421 AAMLAPRPPN RKFKRTEQQL AAQRRIRRPF SVTEVEALVQ AVEKLGTGRW RDVKVRAFED
481 ADHRTYVDLK DKWKTLVHTA RISPQQRRGE PVPQELLDRV LKAHAYWSQH LMHQLQTEPP
541 STQVEAL
//