LOCUS AEE78176.1 553 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana TRF-like 1 protein.
ACCESSION CP002686-6325
PROTEIN_ID AEE78176.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="TRFL1"
/locus_tag="AT3G46590"
/gene_synonym="ATTRP2"
/gene_synonym="TRF-like 1"
/gene_synonym="TRP2"
/inference="Similar to RNA sequence,
EST:INSD:ES015321.1,INSD:BP789488.1,INSD:EL992748.1,
INSD:BP866331.1,INSD:EL104186.1,INSD:EL041034.1,
INSD:EG490962.1,INSD:BP862662.1,INSD:BP845632.1,
INSD:EG528235.1,INSD:BP846945.1,INSD:ES134477.1,
INSD:BX834854.1,INSD:ES040050.1,INSD:BP779415.1,
INSD:EH979193.1,INSD:EG490961.1,INSD:CB261886.1,
INSD:EL207795.1,INSD:EL168623.1,INSD:EL140396.1,
INSD:EH853130.1,INSD:AV825635.1,INSD:BP623715.1,
INSD:BP777676.1,INSD:EL083734.1,INSD:AV829851.1,
INSD:BP780348.1,INSD:ES116925.1,INSD:F15179.1,
INSD:EG522174.1,INSD:EL338947.1,INSD:CF772942.1,
INSD:BP851659.1,INSD:BP798089.1,INSD:EL986976.1,
INSD:ES120581.1,INSD:EL142979.1,INSD:BP853013.1,
INSD:EL978072.1,INSD:EH825917.1,INSD:EH970808.1,
INSD:EL080861.1,INSD:DR354325.1,INSD:EH864781.1,
INSD:BP862172.1,INSD:AV808894.1,INSD:EL997118.1,
INSD:BP779729.1,INSD:ES046193.1,INSD:BP846947.1,
INSD:EL257581.1,INSD:EH934039.1,INSD:BP625464.1,
INSD:BP791235.1,INSD:ES182019.1,INSD:F15180.1,
INSD:BP661336.1,INSD:AV824450.1,INSD:EG528236.1,
INSD:EL980135.1,INSD:BP587000.1,INSD:ES043086.1,
INSD:CB264010.1,INSD:AV786201.1,INSD:ES034873.1,
INSD:EH925196.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK229705.1,INSD:BT033142.1,INSD:BX822804.1,
INSD:AY090966.1"
/note="TRF-like 1 (TRFL1); CONTAINS InterPro DOMAIN/s:
SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like
(InterPro:IPR009057), Ubiquitin supergroup
(InterPro:IPR019955), Homeodomain-related
(InterPro:IPR012287), HTH transcriptional regulator,
Myb-type, DNA-binding (InterPro:IPR017930); BEST
Arabidopsis thaliana protein match is: telomeric repeat
binding protein 1 (TAIR:AT5G59430.3); Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink)."
/db_xref="TAIR:AT3G46590"
/db_xref="Araport:AT3G46590"
intron_pos 28:0 (1/8)
intron_pos 216:1 (2/8)
intron_pos 264:1 (3/8)
intron_pos 285:1 (4/8)
intron_pos 312:0 (5/8)
intron_pos 377:2 (6/8)
intron_pos 475:2 (7/8)
intron_pos 497:0 (8/8)
BEGIN
1 MVSHKVLEFG DDGYKLPAQA RAPRSLRKKR IYEKKIPGDD KMCAIDLLAT VAGSLLLESK
61 SPVNACLVVQ NTVKNEYPAD ENPVKAVPYS ESPSLFDNGK CGFSSVITNP NHLLVGDKVG
121 KEVEGFSSLG VSGDVKPDVV ASIGSNSSTE VGACGNGSPN ESRDDVNLFS RNDDDENFSG
181 YIRTRMTRPV PRIGDRRIRK ILASRHWKGG SKNNTDAKPW YCSKRSYYLH HHQRSYPIKK
241 RKYFDSVYDS NSDDYRLQGK THKGSRTISS MKSRNASFVS RDHHVKLRIK SFRVPELFVE
301 IPETATVGSL KRMVMEAVTT ILGDGLRVGL MVQGKKVRDD GKTLLQTGIS EENNHLDSLG
361 FSLEPSLETT PQPLLSSYLS DHACDDVTLC HDNALDSSHE PEPSPADSFG KLGTSDHSRA
421 LIPVASAAML APRPPNRKFK RTEQQLAAQR RIRRPFSVTE VEALVQAVEK LGTGRWRDVK
481 VRAFEDADHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLKAH AYWSQHLMHQ
541 LQTEPPSTQV EAL
//