LOCUS AEE78175.1 552 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana TRF-like 1 protein.
ACCESSION CP002686-6327
PROTEIN_ID AEE78175.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="TRFL1"
/locus_tag="AT3G46590"
/gene_synonym="ATTRP2"
/gene_synonym="TRF-like 1"
/gene_synonym="TRP2"
/inference="Similar to RNA sequence,
EST:INSD:ES015321.1,INSD:BP789488.1,INSD:EL992748.1,
INSD:BP866331.1,INSD:EL104186.1,INSD:EL041034.1,
INSD:EG490962.1,INSD:BP862662.1,INSD:BP845632.1,
INSD:EG528235.1,INSD:BP846945.1,INSD:ES134477.1,
INSD:BX834854.1,INSD:ES040050.1,INSD:BP779415.1,
INSD:EH979193.1,INSD:EG490961.1,INSD:CB261886.1,
INSD:EL207795.1,INSD:EL168623.1,INSD:EL140396.1,
INSD:EH853130.1,INSD:BP623715.1,INSD:BP777676.1,
INSD:EL083734.1,INSD:AV829851.1,INSD:BP780348.1,
INSD:ES116925.1,INSD:F15179.1,INSD:EG522174.1,
INSD:EL338947.1,INSD:CF772942.1,INSD:BP851659.1,
INSD:BP798089.1,INSD:EL986976.1,INSD:ES120581.1,
INSD:EL142979.1,INSD:BP853013.1,INSD:EL978072.1,
INSD:EH825917.1,INSD:EH970808.1,INSD:EL080861.1,
INSD:BX838026.1,INSD:EH864781.1,INSD:AV808894.1,
INSD:EL997118.1,INSD:BP779729.1,INSD:ES046193.1,
INSD:BP846947.1,INSD:EL257581.1,INSD:EH934039.1,
INSD:BP625464.1,INSD:BP791235.1,INSD:ES182019.1,
INSD:F15180.1,INSD:BP661336.1,INSD:AV824450.1,
INSD:EL980135.1,INSD:BP587000.1,INSD:ES043086.1,
INSD:CB264010.1,INSD:AV786201.1,INSD:ES034873.1,
INSD:EH925196.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY568647.1,INSD:AY519541.1,INSD:AJ630475.1,
INSD:AY090966.1"
/note="TRF-like 1 (TRFL1); CONTAINS InterPro DOMAIN/s:
SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like
(InterPro:IPR009057), Ubiquitin supergroup
(InterPro:IPR019955), HTH transcriptional regulator,
Myb-type, DNA-binding (InterPro:IPR017930),
Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis
thaliana protein match is: telomeric repeat binding
protein 1 (TAIR:AT5G59430.3); Has 310 Blast hits to 294
proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 289; Viruses - 0; Other
Eukaryotes - 21 (source: NCBI BLink)."
/db_xref="TAIR:AT3G46590"
/db_xref="Araport:AT3G46590"
intron_pos 28:0 (1/8)
intron_pos 215:1 (2/8)
intron_pos 263:1 (3/8)
intron_pos 284:1 (4/8)
intron_pos 311:0 (5/8)
intron_pos 376:2 (6/8)
intron_pos 474:2 (7/8)
intron_pos 496:0 (8/8)
BEGIN
1 MVSHKVLEFG DDGYKLPAQA RAPRSLRKRI YEKKIPGDDK MCAIDLLATV AGSLLLESKS
61 PVNACLVVQN TVKNEYPADE NPVKAVPYSE SPSLFDNGKC GFSSVITNPN HLLVGDKVGK
121 EVEGFSSLGV SGDVKPDVVA SIGSNSSTEV GACGNGSPNE SRDDVNLFSR NDDDENFSGY
181 IRTRMTRPVP RIGDRRIRKI LASRHWKGGS KNNTDAKPWY CSKRSYYLHH HQRSYPIKKR
241 KYFDSVYDSN SDDYRLQGKT HKGSRTISSM KSRNASFVSR DHHVKLRIKS FRVPELFVEI
301 PETATVGSLK RMVMEAVTTI LGDGLRVGLM VQGKKVRDDG KTLLQTGISE ENNHLDSLGF
361 SLEPSLETTP QPLLSSYLSD HACDDVTLCH DNALDSSHEP EPSPADSFGK LGTSDHSRAL
421 IPVASAAMLA PRPPNRKFKR TEQQLAAQRR IRRPFSVTEV EALVQAVEKL GTGRWRDVKV
481 RAFEDADHRT YVDLKDKWKT LVHTARISPQ QRRGEPVPQE LLDRVLKAHA YWSQHLMHQL
541 QTEPPSTQVE AL
//