LOCUS AEE78167.1 660 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana plant U-box 13 protein.
ACCESSION CP002686-6313
PROTEIN_ID AEE78167.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="PUB13"
/locus_tag="AT3G46510"
/gene_synonym="ARABIDOPSIS THALIANA PLANT U-BOX 13"
/gene_synonym="ATPUB13"
/gene_synonym="plant U-box 13"
/inference="Similar to RNA sequence,
EST:INSD:EH868584.1,INSD:AV799055.1,INSD:EL184299.1,
INSD:EL092366.1,INSD:EL272330.1,INSD:EL072747.1,
INSD:AI998984.1,INSD:BP592788.1,INSD:EL260448.1,
INSD:BP828419.1,INSD:BP658394.1,INSD:BP823084.1,
INSD:EL171475.1,INSD:R87023.1,INSD:EL237259.1,
INSD:EL240662.1,INSD:DR362406.1,INSD:CF651796.1,
INSD:T22904.1,INSD:EH921188.1,INSD:BP625917.1,
INSD:AV827706.1,INSD:AV546729.1,INSD:BP633083.1,
INSD:AI099752.1,INSD:BX840044.1,INSD:AV563817.1,
INSD:ES108550.1,INSD:BP600576.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY042791.1,INSD:AY128813.1,INSD:BX823581.1,
INSD:BX824336.1"
/note="plant U-box 13 (PUB13); CONTAINS InterPro DOMAIN/s:
U box domain (InterPro:IPR003613), Armadillo-like helical
(InterPro:IPR011989), Armadillo (InterPro:IPR000225),
Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis
thaliana protein match is: PLANT U-BOX 12
(TAIR:AT2G28830.1); Has 8308 Blast hits to 5676 proteins
in 314 species: Archae - 6; Bacteria - 52; Metazoa - 2498;
Fungi - 809; Plants - 4013; Viruses - 3; Other Eukaryotes
- 927 (source: NCBI BLink)."
/db_xref="TAIR:AT3G46510"
/db_xref="Araport:AT3G46510"
intron_pos 91:0 (1/3)
intron_pos 130:0 (2/3)
intron_pos 280:0 (3/3)
BEGIN
1 MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED
61 TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK LMEVSVKLEQ SLSQIPYEEL
121 DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH
181 LMEIPDLAQE SVALHEMVAS SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR
241 SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301 QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR
361 LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV GLLSTPDSRI QEHSVTALLN
421 LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP
481 LVVLLNEGTQ RGKKDAATAL FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI
541 LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601 LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT
//