LOCUS AEE78133.1 239 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Ribosomal protein S5 domain 2-like
superfamily protein protein.
ACCESSION CP002686-6261
PROTEIN_ID AEE78133.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G46210"
/inference="Similar to RNA sequence,
EST:INSD:ES064424.1,INSD:ES006711.1,INSD:EL164473.1,
INSD:BP666000.1,INSD:EL031979.1,INSD:ES061545.1,
INSD:ES000457.1,INSD:AU226871.1,INSD:AA721884.1,
INSD:ES004456.1,INSD:EL246716.1,INSD:ES184097.1,
INSD:ES183357.1,INSD:EL291725.1,INSD:DR374658.1,
INSD:Z17573.1,INSD:EH945779.1,INSD:ES045526.1,
INSD:ES148231.1,INSD:DR315431.1"
/inference="Similar to RNA sequence, mRNA:INSD:BT003125.1"
/note="Ribosomal protein S5 domain 2-like superfamily
protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA
binding; INVOLVED IN: RNA processing; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 20 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain
1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type
fold (InterPro:IPR020568); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G07110.1); Has
6526 Blast hits to 6524 proteins in 2015 species: Archae -
242; Bacteria - 4366; Metazoa - 314; Fungi - 210; Plants -
230; Viruses - 0; Other Eukaryotes - 1164 (source: NCBI
BLink)."
/db_xref="TAIR:AT3G46210"
/db_xref="Araport:AT3G46210"
intron_pos 36:1 (1/7)
intron_pos 74:1 (2/7)
intron_pos 108:0 (3/7)
intron_pos 115:0 (4/7)
intron_pos 139:1 (5/7)
intron_pos 162:0 (6/7)
intron_pos 206:1 (7/7)
BEGIN
1 MEIDREDGRT PNQLRPLACS RNILHRPHGS ASWSQGDTKV LAAVYGPKAG TKKNENAEKA
61 CFEVIWKPKS GQIGKVEKEY EMILKRTIQS ICVLTVNPNT TTSVIIQVVH DDGSLLPCAI
121 NAACAALVDA GIPMKHLAVA ICCCLAENGY LVLDPNKLEE KKMTAFAYLV FPNTTLSVLP
181 EGSSVAEGEP VEHGIITSIT HGVMSVDDYF LCVENGRAAT ASLSAFFRKN FQQSSSKAG
//