LOCUS AEE78048.1 237 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana splicing endonuclease 1 protein.
ACCESSION CP002686-6147
PROTEIN_ID AEE78048.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="SEN1"
/locus_tag="AT3G45590"
/gene_synonym="ATSEN1"
/gene_synonym="splicing endonuclease 1"
/inference="Similar to RNA sequence,
EST:INSD:BP602204.1,INSD:BP618521.1,INSD:EL975897.1,
INSD:BP603623.1,INSD:AV560877.1,INSD:AV803084.1,
INSD:AV566270.1,INSD:BP792023.1,INSD:AV819962.1,
INSD:AV788347.1,INSD:BP614503.1,INSD:AV562716.1,
INSD:BP599960.1,INSD:BP633357.1,INSD:AV797819.1,
INSD:AV782572.1,INSD:AV558875.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BT024625.1,INSD:AK221492.1"
/note="splicing endonuclease 1 (SEN1); FUNCTIONS IN:
tRNA-intron endonuclease activity, nuclease activity,
nucleic acid binding; INVOLVED IN: tRNA splicing, via
endonucleolytic cleavage and ligation; LOCATED IN:
tRNA-intron endonuclease complex; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: tRNA-intron endonuclease
(InterPro:IPR006676), tRNA intron endonuclease, catalytic
domain-like (InterPro:IPR006677), Endonuclease TnsA,
N-terminal/resolvase Hjc/tRNA endonuclease, C-terminal
(InterPro:IPR011856), tRNA intron endonuclease, N-terminal
(InterPro:IPR006678); BEST Arabidopsis thaliana protein
match is: splicing endonuclease 2 (TAIR:AT5G60230.2); Has
489 Blast hits to 489 proteins in 224 species: Archae -
131; Bacteria - 0; Metazoa - 123; Fungi - 137; Plants -
68; Viruses - 0; Other Eukaryotes - 30 (source: NCBI
BLink)."
/db_xref="TAIR:AT3G45590"
/db_xref="Araport:AT3G45590"
BEGIN
1 MAPRWKWKGA EAKALAEPVS KTVSELRSSL TQTEALGFLS SCNVLLSVES EEAELLDRCC
61 FGRLVVGAEK DKRWIQLSFE EAFFLFYKLK CIKICLHGRS LENEVDLWRS MSSFKQDFAI
121 LYKAYSHLRS KNWIVRSGLQ YGVDFVVYRH HPSLVHSEYA VLVQSIGGND RLKVWSDIHC
181 SVRLTGSVAK SLLVLYVNRK VNTEKMNLPL CLEDYTVEEQ TIRRWSPELS REDETRT
//