LOCUS AEE78033.1 389 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana IBR domain containing protein protein.
ACCESSION CP002686-6131
PROTEIN_ID AEE78033.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G45460"
/inference="Similar to RNA sequence,
EST:INSD:EG495508.1,INSD:EG495505.1,INSD:EG495502.1,
INSD:EG495488.1,INSD:EG495503.1,INSD:EG495498.1,
INSD:EG495500.1,INSD:EG495495.1,INSD:EG495493.1,
INSD:EG495491.1,INSD:EG495494.1,INSD:EG495490.1,
INSD:EG495497.1,INSD:EG495501.1,INSD:EG495489.1,
INSD:EG495486.1,INSD:EG495499.1,INSD:EG495487.1,
INSD:EG495506.1,INSD:EG495504.1,INSD:EG495492.1"
/inference="Similar to RNA sequence,
mRNA:INSD:DQ653132.1,INSD:DQ446737.1"
/note="IBR domain containing protein; FUNCTIONS IN: zinc
ion binding; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN:
flower; EXPRESSED DURING: petal differentiation and
expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger,
C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana
protein match is: RING/U-box protein with C6HC-type zinc
finger (TAIR:AT3G45480.1); Has 1686 Blast hits to 1674
proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa
- 656; Fungi - 285; Plants - 509; Viruses - 0; Other
Eukaryotes - 236 (source: NCBI BLink)."
/db_xref="TAIR:AT3G45460"
/db_xref="Araport:AT3G45460"
intron_pos 112:0 (1/2)
intron_pos 340:2 (2/2)
BEGIN
1 MEKEGTLERD YGRNPTGKPS PGDFHSDTYN LYFKGLVREK TSAQLSAGFE VAIFREEDEY
61 LLFQMKGSLH DSTVTVLEAE LMALKRGLTE AVSLGINHIS ICCDRLELYE LVMGRLAPEK
121 ENIALLMDDV QCIRRELTSS IPVTVTENQA KFAFKLAKES ISIRTPPTEQ KACGEVNIEH
181 ELMFSVALCR HQFGVEWMKQ HIEVRLIEGD VPRCPHDGCK SILSLKSCSH LLTPKLEEMW
241 EHRIKEEFIP VCDRFHCPNP RCWALMSKTE LVESTEDGVR RCCFKCRKAF CINCKVLWHS
301 DLSCKEYKTL GRNPKTISRQ CKKCQHMIKL SHKTINVYCR CGYSFCYTCG AQWKLGGCRH
361 HNQMVAAVLV LVFFFIFHSM IMWSISRRV
//