LOCUS AEE77882.1 280 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Polynucleotidyl transferase, ribonuclease
H-like superfamily protein protein.
ACCESSION CP002686-5901
PROTEIN_ID AEE77882.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="CAF1a"
/locus_tag="AT3G44260"
/gene_synonym="AtCAF1a"
/gene_synonym="CCR4- associated factor 1a"
/inference="Similar to RNA sequence,
EST:INSD:EL039489.1,INSD:EH838657.1,INSD:EH982915.1,
INSD:DR333914.1,INSD:CD531087.1,INSD:CB254171.1,
INSD:BP818937.1,INSD:CB254426.1,INSD:EL167650.1,
INSD:CD531411.1,INSD:Z33735.1,INSD:CB252143.1,
INSD:EL209463.1,INSD:DR333915.1,INSD:BP830797.1,
INSD:BP616205.1,INSD:CD531551.1,INSD:AV537113.1,
INSD:AV794104.1,INSD:CB265013.1,INSD:CB253436.1,
INSD:CD531088.1,INSD:CB254379.1,INSD:ES183023.1,
INSD:EL090035.1,INSD:N38276.1,INSD:BP602977.1,
INSD:EG481545.1,INSD:CB255354.1,INSD:Z33734.1,
INSD:EH986354.1,INSD:EL217942.1,INSD:CB254375.1,
INSD:AV826234.1,INSD:DR333913.1,INSD:CB254430.1,
INSD:EG459681.1,INSD:EL250826.1,INSD:CD529420.1,
INSD:CB252055.1,INSD:CD534792.1,INSD:CB253033.1,
INSD:CD532848.1,INSD:CB252484.1,INSD:AI992671.1,
INSD:CB254312.1,INSD:CD533285.1,INSD:CD531185.1,
INSD:CB252962.1,INSD:EG467333.1,INSD:EH958852.1,
INSD:BP836847.1,INSD:CB253433.1,INSD:AV554604.1,
INSD:EL308715.1,INSD:DR333917.1,INSD:CB252316.1,
INSD:CB252315.1,INSD:CB252376.1,INSD:DR333920.1,
INSD:AV790693.1,INSD:CD534589.1,INSD:CB254308.1,
INSD:CD534574.1,INSD:EG481544.1,INSD:CB252312.1,
INSD:BP645867.1,INSD:DR333916.1,INSD:BG459238.1,
INSD:CB252718.1,INSD:EH907016.1,INSD:CD534588.1,
INSD:BP809732.1,INSD:BP612481.1,INSD:DR333919.1,
INSD:DR380323.1,INSD:BP604130.1,INSD:CD529954.1,
INSD:DR333918.1,INSD:CB253534.1,INSD:AV536279.1,
INSD:AV526876.1,INSD:DR375814.1,INSD:T42286.1,
INSD:AI997050.1,INSD:AV536941.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY050848.1,INSD:AY117220.1"
/note="Polynucleotidyl transferase, ribonuclease H-like
superfamily protein; FUNCTIONS IN: ribonuclease activity,
nucleic acid binding; INVOLVED IN: response to biotic
stimulus, response to wounding, RNA modification; LOCATED
IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s:
Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl
transferase, ribonuclease H fold (InterPro:IPR012337);
BEST Arabidopsis thaliana protein match is:
Polynucleotidyl transferase, ribonuclease H-like
superfamily protein (TAIR:AT5G22250.1); Has 907 Blast hits
to 905 proteins in 225 species: Archae - 0; Bacteria - 0;
Metazoa - 261; Fungi - 149; Plants - 375; Viruses - 0;
Other Eukaryotes - 122 (source: NCBI BLink)."
/db_xref="TAIR:AT3G44260"
/db_xref="Araport:AT3G44260"
BEGIN
1 MAIIKPNRDL KPDGVTVVTR EVWAENLESE FELISEIIDD YPFISMDTEF PGVIFKSDLR
61 FTNPDDLYTL LKANVDALSL IQVGLTLSDV NGNLPDLGDD LHRGFIWEFN FRDFDVARDA
121 HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK
181 ILTRRELPGA LGEFKRVMRV LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC
241 HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
//