LOCUS AEE77745.1 1256 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana chromatin remodeling 38 protein.
ACCESSION CP002686-5738
PROTEIN_ID AEE77745.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="CHR38"
/locus_tag="AT3G42670"
/gene_synonym="chromatin remodeling 38"
/gene_synonym="CLASSY 1"
/gene_synonym="CLASSY1"
/gene_synonym="CLSY"
/gene_synonym="CLSY1"
/inference="Similar to RNA sequence,
EST:INSD:AI993178.1,INSD:EL056122.1,INSD:T46075.1,
INSD:EL183821.1,INSD:EH879898.1,INSD:AV546797.1,
INSD:DR380450.1"
/note="chromatin remodeling 38 (CHR38); FUNCTIONS IN:
helicase activity, DNA binding, ATP binding, nucleic acid
binding; INVOLVED IN: gene silencing by RNA; LOCATED IN:
nucleolus; EXPRESSED IN: 13 plant structures; EXPRESSED
DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s:
DEAD-like helicase, N-terminal (InterPro:IPR014001),
DNA/RNA helicase, C-terminal (InterPro:IPR001650),
Helicase, superfamily 1/2, ATP-binding domain
(InterPro:IPR014021), SNF2-related (InterPro:IPR000330);
BEST Arabidopsis thaliana protein match is: chromatin
remodeling 42 (TAIR:AT5G20420.1); Has 13835 Blast hits to
12445 proteins in 1668 species: Archae - 89; Bacteria -
4181; Metazoa - 3164; Fungi - 3150; Plants - 1308; Viruses
- 62; Other Eukaryotes - 1881 (source: NCBI BLink)."
/db_xref="TAIR:AT3G42670"
/db_xref="Araport:AT3G42670"
intron_pos 17:1 (1/4)
intron_pos 95:0 (2/4)
intron_pos 567:0 (3/4)
intron_pos 613:0 (4/4)
BEGIN
1 MKRKHYFEFN HPFNPCPFEV FCWGTWKAVE YLRIENGTMT MRLLENGQVL DDIKPFQRLR
61 IRSRKATLID CTSFLRPGID VCVLYQRDEE TPEPVWVDAR VLSIERKPHE SECLCTFHVS
121 VYIDQGCIGL EKHRMNKVPV LVGLNEIAIL QKFCKEQSLD RYYRWRYSED CSSLVKTRLN
181 LGKFLPDLTW LLVTSVLKNI VFQIRTVHEK MVYQIVTDED CEGSSSSLSA MNITVEDGVV
241 MSKVVLFNPA EDTCQDSDVK EEIEEEVMEL RRSKRRSGRP ERYGDSEIQP DSKDGWVRMM
301 PYRYNIWNVS SDDDDEEEDC EDDKDTDDDL YLPLSHLLRK KGSKKGFSKD KQREIVLVDK
361 TERKKRKKTE GFSRSCELSV IPFTPVFEPI PLEQFGLNAN SLCGGVSGNL MDEIDKYRSK
421 AAKYGKKKKK KIEMEEMESD LGWNGPIGNV VHKRNGPHSR IRSVSRETGV SEEPQIYKKR
481 TLSAGAYNKL IDSYMSRIDS TIAAKDKATN VVEQWQGLKN PASFSIEAEE RLSEEEEDDG
541 ETSENEILWR EMELCLASSY ILDDHEVRVD NEAFHKATCD CEHDYELNEE IGMCCRLCGH
601 VGTEIKHVSA PFARHKKWTT ETKQINEDDI NTTIVNQDGV ESHTFTIPVA SSDMPSAEES
661 DNVWSLIPQL KRKLHLHQKK AFEFLWKNLA GSVVPAMMDP SSDKIGGCVV SHTPGAGKTF
721 LIIAFLASYL KIFPGKRPLV LAPKTTLYTW YKEFIKWEIP VPVHLLHGRR TYCMSKEKTI
781 QFEGIPKPSQ DVMHVLDCLD KIQKWHAQPS VLVMGYTSFL TLMREDSKFA HRKYMAKVLR
841 ESPGLLVLDE GHNPRSTKSR LRKALMKVDT DLRILLSGTL FQNNFCEYFN TLCLARPKFV
901 HEVLVELDKK FQTNQAEQKA PHLLENRARK FFLDIIAKKI DTKVGDERLQ GLNMLRNMTS
961 GFIDNYEGSG SGSGDVLPGL QIYTLLMNST DVQHKSLTKL QNIMSTYHGY PLELELLITL
1021 AAIHPWLVKT TTCCAKFFNP QELLEIEKLK HDAKKGSKVM FVLNLVFRVV KREKILIFCH
1081 NIAPIRLFLE LFENVFRWKR GRELLTLTGD LELFERGRVI DKFEEPGGQS RVLLASITAC
1141 AEGISLTAAS RVIMLDSEWN PSKTKQAIAR AFRPGQQKVV YVYQLLSRGT LEEDKYRRTT
1201 WKEWVSSMIF SEEFVEDPSQ WQAEKIEDDV LREIVEEDKV KSFHMIMKNE KASTGG
//