LOCUS AEE77517.1 445 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana mediator of RNA polymerase II transcription
subunit-like protein, putative (DUF1216) protein.
ACCESSION CP002686-5448
PROTEIN_ID AEE77517.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G28980"
/inference="Similar to RNA sequence,
EST:INSD:BP829966.1,INSD:BP821753.1,INSD:AV791089.1,
INSD:Z26389.1,INSD:DR349946.1,INSD:DR349945.1,
INSD:Z25584.1,INSD:DR349948.1,INSD:BP836602.1,
INSD:BP839529.1,INSD:BP820908.1,INSD:BP839005.1,
INSD:BP594084.1,INSD:DR349944.1"
/inference="Similar to RNA sequence, mRNA:INSD:AY056215.2"
/note="Protein of unknown function (DUF1216); FUNCTIONS
IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 10 plant structures; EXPRESSED
DURING: L mature pollen stage, M germinated pollen stage,
4 anthesis, C globular stage, petal differentiation and
expansion stage; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1216 (InterPro:IPR009605); BEST
Arabidopsis thaliana protein match is: Protein of unknown
function (DUF1216) (TAIR:AT3G28810.1); Has 19096 Blast
hits to 8873 proteins in 1199 species: Archae - 74;
Bacteria - 6296; Metazoa - 3722; Fungi - 2666; Plants -
452; Viruses - 176; Other Eukaryotes - 5710 (source: NCBI
BLink)."
/db_xref="TAIR:AT3G28980"
/db_xref="Araport:AT3G28980"
intron_pos 118:0 (1/2)
intron_pos 356:0 (2/2)
BEGIN
1 MARVQLLLCF TILFASVTLL DLVSAHLKFK PSLPQIEDPK TVKDVEPYTV KVVMVFVADL
61 EKECPKTNKF KAFFEKLRGF AKYVCPIRRI GQVDYDRDMK AKAGGIFKAI SSFAIGKIRE
121 EIQEEKQEAI DTFRFMKSVA AKIMGGRKKE ENEETMTLTA EQQKEIKEGI LKWETIITRI
181 TNTMVSSTST SASSSEESSV GKESETSAKG ESETSAKNES KTSAKGESET SAKGESKTSA
241 KGESETSAKG ESETSAKGES ETSSSKTAEA SQSSSLTVTQ VEEETSKDVS TFIMNLEKKC
301 PQKEEFKVFF EQLKGTMIAP RKERKGLFSR IKTAAGKISG AMQVMRSRIG SKSAEVKKNM
361 EAYQEQVMKT LEELDTIHAQ IVSQNKGKAS LTCTPTQQVQ IKQTITKWEQ VTTQFVEVAA
421 QSESSASSSS SSSSSSSSSG KMQAK
//