LOCUS AEE77354.1 908 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana zinc finger (CCCH-type) family protein
/ RNA recognition motif (RRM)-containing protein protein.
ACCESSION CP002686-5203
PROTEIN_ID AEE77354.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G27700"
/inference="Similar to RNA sequence,
EST:INSD:DR356580.1,INSD:BP818360.1,INSD:AV825397.1,
INSD:EL993647.1,INSD:ES044852.1,INSD:AV538418.1,
INSD:AV826680.1,INSD:AV830752.1,INSD:BP822221.1,
INSD:DR232538.1,INSD:DR356578.1,INSD:ES144295.1,
INSD:EL073127.1,INSD:DR356579.1,INSD:AV550691.1,
INSD:AV823388.1,INSD:R84100.1,INSD:AI993418.1,
INSD:AV530063.1,INSD:ES032550.1,INSD:ES084519.1,
INSD:ES037632.1,INSD:EL005748.1,INSD:EL166540.1,
INSD:BP840276.1,INSD:ES091001.1,INSD:EL082174.1"
/note="zinc finger (CCCH-type) family protein / RNA
recognition motif (RRM)-containing protein; FUNCTIONS IN:
RNA binding, nucleotide binding, zinc ion binding, nucleic
acid binding; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type
(InterPro:IPR000571), RNA recognition motif, RNP-1
(InterPro:IPR000504), Nucleotide-binding, alpha-beta plait
(InterPro:IPR012677); Has 3790 Blast hits to 2562 proteins
in 343 species: Archae - 8; Bacteria - 521; Metazoa - 625;
Fungi - 291; Plants - 164; Viruses - 7; Other Eukaryotes -
2174 (source: NCBI BLink)."
/db_xref="TAIR:AT3G27700"
/db_xref="Araport:AT3G27700"
intron_pos 237:0 (1/3)
intron_pos 627:0 (2/3)
intron_pos 732:0 (3/3)
BEGIN
1 MELSVSSPKQ SVLSPPDCMS DPEEEHEISE EEDDDRNHKH RRKEETRSQS LEQDSSDQAF
61 SRPYRKNYRH YENGNSFSEH EKRSFGTGSG QRVQFDNQRM RSNPMFSRDS GPGRGRGNYG
121 SWAQRDSRFN PVDLSSHMVQ VGSMGQGMFG GRGLAGVSAA QSAPWPPFGM IPGVPNGGLD
181 GFHHLQGSLR PPLNAPLNMG IPRQRCRDFE ERGFCLRGDM CPMEHGMNRI VVDDVQSLSQ
241 FNLPVSVPGA PHLAASSKQV PAQFGGASFM NPKGAHGRTN EGGMAVDGLG YGDAYPSAGG
301 TDFYDPDQPL WNNSTGETSG AISTLNSHGV DENVAPLDDS NQDAAENGCG IRDSRSTSQS
361 VWGRMKGSNS QANSKEKADA VLNSSAVPED QLKEVSVNSS RHGKQNHVGE SVAKVVDSSN
421 ISNDMMNNTR KPTQKAMRTL FVNYVPHESN RRDLILAHFQ KFGKVIDIHI PVNSERAFVQ
481 FSKREEAESA LRAPDAVMGN RFIKLWWANR DSIPDNGLST GSGASMKGRS MTASGAQNQF
541 PIAAASKSNH VSSIAKVPTF QTGGAPSSSE QPKPVVVTTS GPKVTPLQQK KADTLERLKE
601 TLRKKQEMLE QKRNEYRKKL ATLEKQGTVV KREEADEPDA KRVKLDTASD SGAAIASPKT
661 ESSTDKKVPI LKPLSTAKLS TETPSPDSKN FKQRPYSFTT SLNAPMVNRY KLDNRTTTIK
721 VVPPLPTGLA DVAVVKEHFS SYGEVSKVEL EDNASIDSGK DHETQNESRA ACVTFVKRSA
781 AEKAFANAKC WQEHTLQLVW VTRQSNRESN NNNNNSNSLS VSRDNLSSKN KCASVSNDPK
841 PAVEVKTSST EEPENTNVSG DNDSTLDKQE TKESDNDNNK SNHESIEGAS EVIATAGTDE
901 EQSEQIHQ
//