LOCUS AEE77178.1 1168 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana ATP-dependent RNA helicase protein.
ACCESSION CP002686-4945
PROTEIN_ID AEE77178.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G26560"
/inference="Similar to RNA sequence,
EST:INSD:EL290303.1,INSD:ES155143.1,INSD:AV829291.1,
INSD:ES010436.1,INSD:AV546260.1,INSD:ES071062.1,
INSD:EL147738.1,INSD:CB261246.1,INSD:ES194295.1,
INSD:EL151550.1,INSD:EL163830.1,INSD:EL971014.1,
INSD:EL970706.1,INSD:ES155893.1,INSD:EL110876.1,
INSD:ES163612.1,INSD:ES166125.1,INSD:EH971444.1,
INSD:ES168213.1,INSD:EL207623.1,INSD:EL163978.1,
INSD:BP659189.1,INSD:EG485873.1,INSD:EH828024.1,
INSD:ES028709.1,INSD:AV440950.1,INSD:EL314152.1,
INSD:ES191851.1,INSD:EL968735.1,INSD:EL306659.1,
INSD:EL049313.1,INSD:BP825886.1,INSD:ES053619.1,
INSD:BP823193.1,INSD:ES028247.1,INSD:ES069724.1,
INSD:BP824110.1,INSD:AV547441.1,INSD:BP612882.1,
INSD:EH834098.1,INSD:ES030103.1,INSD:BP805660.1,
INSD:EL180348.1,INSD:AV442557.1,INSD:EL985330.1,
INSD:EL972447.1,INSD:EG485872.1,INSD:BP805778.1,
INSD:AV547842.1,INSD:ES205696.1,INSD:BP604343.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK228850.1,INSD:AK226989.1,INSD:AK230289.1,
INSD:X97970.1,INSD:AK222021.1"
/note="ATP-dependent RNA helicase, putative; FUNCTIONS IN:
in 6 functions; LOCATED IN: cytosol, mitochondrion;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s:
Helicase-associated domain (InterPro:IPR007502), DNA/RNA
helicase, DEAD/DEAH box type, N-terminal
(InterPro:IPR011545), Nucleic acid-binding, OB-fold
(InterPro:IPR012340), Domain of unknown function DUF1605
(InterPro:IPR011709), Ribosomal protein S1, RNA-binding
domain (InterPro:IPR003029), Nucleic acid-binding,
OB-fold-like (InterPro:IPR016027), DNA/RNA helicase,
ATP-dependent, DEAH-box type, conserved site
(InterPro:IPR002464), DEAD-like helicase, N-terminal
(InterPro:IPR014001), DNA/RNA helicase, C-terminal
(InterPro:IPR001650), Helicase, superfamily 1/2,
ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis
thaliana protein match is: RNA helicase family protein
(TAIR:AT1G32490.2); Has 53052 Blast hits to 35825 proteins
in 3176 species: Archae - 195; Bacteria - 13845; Metazoa -
17201; Fungi - 5520; Plants - 3365; Viruses - 1203; Other
Eukaryotes - 11723 (source: NCBI BLink)."
/db_xref="TAIR:AT3G26560"
/db_xref="Araport:AT3G26560"
intron_pos 1038:2 (1/1)
BEGIN
1 MEKEELNKLN HLSLVSNVCN ELETHLGSAE KVLAEFIIDL GRHSETVDEF DKNLKEAGAE
61 MPDYFVRSLL TTIHGIYPPK PKSEKKKEEG DDQKFKGLAI KDTKDKVKEL EKEIEREAEE
121 RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG
181 RGDGGEGEDR RRDRRAKDEY VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE
241 GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
301 DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG
361 VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL QGQTRYSVDM SPVKIFKNPE
421 GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG
481 LSAYDMPEWK KDAFGKTPTF GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET
541 GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
601 CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD
661 LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK QPETDYLDAA LITVLQIHLT
721 EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP
781 GKRKVVVATN IAEASLTIDG IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR
841 AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
901 PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA
961 MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE AWKAKNFSGP WCFENFIQSR
1021 SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN
1081 QPVYIHPSSA LFQRQPDWVI YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS
1141 KRKRQERIEP LYDRYHEPNS WRLSKRRA
//