LOCUS AEE76940.1 159 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana mRNA splicing factor, thioredoxin-
like U5 snRNP protein.
ACCESSION CP002686-4607
PROTEIN_ID AEE76940.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G24730"
/inference="Similar to RNA sequence,
EST:INSD:DR321028.1,INSD:EH850705.1,INSD:ES068411.1,
INSD:DR321031.1,INSD:EL039912.1,INSD:EL202068.1,
INSD:DR321035.1,INSD:DR321030.1,INSD:EH954299.1,
INSD:BP833707.1,INSD:EL205100.1,INSD:ES047250.1,
INSD:DR321027.1,INSD:DR321032.1,INSD:EL118728.1,
INSD:ES106164.1,INSD:DR321034.1,INSD:DR372253.1,
INSD:DR321033.1,INSD:EL262500.1,INSD:DR321029.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK176149.1,INSD:BX825801.1,INSD:BT011726.1"
/note="mRNA splicing factor, thioredoxin-like U5 snRNP;
FUNCTIONS IN: catalytic activity; INVOLVED IN: mitosis;
LOCATED IN: spliceosomal complex; CONTAINS InterPro
DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), mRNA
splicing factor, thioredoxin-like U5 snRNP
(InterPro:IPR004123), Thioredoxin-like fold
(InterPro:IPR012336); BEST Arabidopsis thaliana protein
match is: mRNA splicing factor, thioredoxin-like U5 snRNP
(TAIR:AT5G08290.1); Has 535 Blast hits to 535 proteins in
209 species: Archae - 0; Bacteria - 0; Metazoa - 213;
Fungi - 146; Plants - 109; Viruses - 0; Other Eukaryotes -
67 (source: NCBI BLink)."
/db_xref="TAIR:AT3G24730"
/db_xref="Araport:AT3G24730"
intron_pos 53:0 (1/3)
intron_pos 105:2 (2/3)
intron_pos 128:0 (3/3)
BEGIN
1 MSYNSYAEMS YLLKTLTTKE EIDRVIRDTI DEVLVLRFGR SSDAVCLQHD EILAKSVRDV
61 SKFAKVALVD VDSEDVQVYV KYFDITLFPS TIFFFNAHHM KLDSGTADHT KWVGAFHIKQ
121 DFIDVVEAIY RGAMKGKMIV QCPIPPERIP KYQLVYKDV
//