LOCUS AEE76880.1 746 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-directed DNA polymerase (reverse
transcriptase)-related family protein protein.
ACCESSION CP002686-4524
PROTEIN_ID AEE76880.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G24255"
/inference="Similar to RNA sequence,
EST:INSD:ES047416.1,INSD:ES151177.1,INSD:DR281720.1,
INSD:BP859269.1,INSD:DR281708.1,INSD:ES189635.1,
INSD:DR378582.1,INSD:ES085557.1,INSD:ES025401.1"
/note="RNA-directed DNA polymerase (reverse
transcriptase)-related family protein; CONTAINS InterPro
DOMAIN/s: RNA-directed DNA polymerase (reverse
transcriptase), related (InterPro:IPR015706); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G23910.1); Has 2050 Blast hits to 1978 proteins
in 93 species: Archae - 11; Bacteria - 19; Metazoa - 133;
Fungi - 20; Plants - 1757; Viruses - 0; Other Eukaryotes -
110 (source: NCBI BLink)."
/db_xref="TAIR:AT3G24255"
/db_xref="Araport:AT3G24255"
intron_pos 141:0 (1/11)
intron_pos 349:0 (2/11)
intron_pos 384:0 (3/11)
intron_pos 435:1 (4/11)
intron_pos 457:0 (5/11)
intron_pos 484:0 (6/11)
intron_pos 510:2 (7/11)
intron_pos 583:0 (8/11)
intron_pos 601:2 (9/11)
intron_pos 644:2 (10/11)
intron_pos 706:0 (11/11)
BEGIN
1 MAGVKDNDKA DILHSFPFAS GALPVRYLGL PLLTKKMTTS DYGPLVEKIR VRIGKWTARH
61 LSFAGRLQLI SSVIHSLTNF WMSAFRLPSA CIKEIDSICS SFLWSGPELN TKKAKVAWSD
121 VCTPKDEGGL GIRSLKEANK GSFWSISGNT TLGSWMWKKI LKHRALASGF VKHDIHNGSN
181 TSFWFDNWSK IGRLIDVTGH RGCIDMGITL HASVAEAVVN HRPRRHRHDT LLRIEDVIAE
241 VRHQGLTSGE DTVRWKGNGD IFKPCFNTKE TWAATREPKL KVNWYKGVWF SHATPKYSVL
301 AWIAIKNRLT TGDRMLSWNA GADSSCVLCH HLVETRDHLF FTCPYSAEVP FLTRYTFQLT
361 LHSLWKERNG RRHGEVPQAA AQMMKYESQI MVKLSDGNLT DAYLEYLRNE LQSVEAESAK
421 VSEEIERLSQ SHALDSSRLQ RDLEGLLLSL DSMSSQDVEK SKENQPSSSS MEVCEVIDDD
481 KFKMFELENQ MEEKRMILKS LEDLDSLRKR FDAAEQVEDA LTGLKVLEFD GNFIRLQLRT
541 YIQKLDGFLG QHKFDHITEP SELIHELLIY LKDKTTEITK FEMFPNDIYI GDIIEAADSF
601 RQVRLHSAVL DTRSSVQWVV AKVQDKIIST TLRKDFVMSS KTIRYTFEYY DKDETIVAHI
661 AGGIDAFLKV SDGWPLLNTP LKLASLKNSD NQSKGFSLSL ISKLEELANS LDLETRQNLS
721 GFMDAVEKIL VQQTREELKS NESSQK
//