LOCUS AEE76830.1 987 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA recognition motif (RRM)-containing
protein protein.
ACCESSION CP002686-4463
PROTEIN_ID AEE76830.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G23900"
/note="RNA recognition motif (RRM)-containing protein;
FUNCTIONS IN: zinc ion binding, nucleotide binding,
nucleic acid binding; INVOLVED IN: biological_process
unknown; LOCATED IN: cellular_component unknown; EXPRESSED
IN: 23 plant structures; EXPRESSED DURING: 14 growth
stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type
(InterPro:IPR000571), Filamin/ABP280 repeat
(InterPro:IPR001298), Immunoglobulin-like fold
(InterPro:IPR013783), RNA recognition motif, RNP-1
(InterPro:IPR000504), Immunoglobulin E-set
(InterPro:IPR014756), Nucleotide-binding, alpha-beta plait
(InterPro:IPR012677), Filamin/ABP280 repeat-like
(InterPro:IPR017868); BEST Arabidopsis thaliana protein
match is: RNA-directed DNA polymerase (reverse
transcriptase)-related family protein (TAIR:AT3G24255.1)."
/db_xref="TAIR:AT3G23900"
/db_xref="Araport:AT3G23900"
intron_pos 193:1 (1/6)
intron_pos 339:1 (2/6)
intron_pos 508:2 (3/6)
intron_pos 929:1 (4/6)
intron_pos 951:0 (5/6)
intron_pos 978:0 (6/6)
BEGIN
1 MASDRGSAAS GGKPIWMKHA EDAKIKDEGE KDAAAKAAFE ATFKGVDQTT HLIEPVAPVP
61 ESAPESDSDS DDDDDDESDY LSRKPIGPVD PSKSTASGAG IGGGTACVPS TFVVVTKDSD
121 GRKVPNGGAL IRVKVSPGVG VGGTDQEGVV KDVGDGSYAV TYVVPKRGNY MVNIECNGNA
181 IMGSPFPVFF SQGSSSTGLM GSAPASYSNL INQTMPNMPN YTGSVSGAFP GLLGMVPGIA
241 SGPSGGAILP GVGASLGEVC REYLNGRCVN SMCKLNHPPQ NLLMTAIAAT TSMGNLSQVP
301 MAPSAAAMAA AQAIVAAQAL QAHASQMQAQ AQSNKGSLGS PEKGENGDLK KFLQVSNLSP
361 SLTTEQLRQL FSFCGTVVDC SITDSKHIAY IEYSNSEEAT AALALNNTEV FGRALNVEIA
421 KSLPHKPSSN NSSSSLPLMM QQAVAMQQMQ FQQAILMQQA VATQQAANRA ATMKSATELA
481 AARAAEISRK LRPDGVGNDE KEADQKSRSP SKSPARSRSK SKSPISYRRR RRSPTYSPPF
541 RRPRSHRSRS PLRYQRRSTY EGRRRSYRDS RDISESRRYG RSDEHHSSSS RRSRSVSPKK
601 RKSGQEDSEL SRLRRDSSSR GEKKSSRAGS RSPRRRKEVK STPRDDEENK VKRRTRSRSR
661 SVEDSADIKD KSRDEELKHH KKRSRSRSRE DRSKTRDTSR NSDEAKQKHR QRSRSRSLEN
721 DNGSHENVDV AQDNDLNSRH SKRRSKSLDE DYDMKERRGR SRSRSLETKN RSSRKNKLDE
781 DRNTGSRRRR SRSKSVEGKR SYNKETRSRD KKSKRRSGRR SRSPSSEGKQ GRDIRSSPGY
841 SDEKKSRHKR HSRSRSIEKK NSSRDKRSKR HERLRSSSPG RDKRRGDRSL SPVSSEDHKI
901 KKRHSGSKSV KEKPHSDYEK VDDGDANSDS SQQERNLEGH LLSLDSMSSQ DVEKSKENPP
961 SSSSVERGDA NDDEKFKIEE KRIILKS
//