LOCUS AEE76827.1 1438 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana topoisomerase II protein.
ACCESSION CP002686-4460
PROTEIN_ID AEE76827.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="TOPII"
/locus_tag="AT3G23890"
/gene_synonym="ATTOPII"
/gene_synonym="topoisomerase II"
/gene_synonym="TOPOISOMERASE II"
/inference="Similar to RNA sequence,
EST:INSD:ES157796.1,INSD:EG517053.1,INSD:EL983326.1,
INSD:EL056760.1,INSD:BP659888.1,INSD:ES053244.1,
INSD:ES177213.1,INSD:EL983488.1,INSD:EL099567.1,
INSD:CF773290.1,INSD:EG517086.1,INSD:ES006679.1,
INSD:AV820203.1,INSD:EH896711.1,INSD:EL997926.1"
/note="topoisomerase II (TOPII); CONTAINS InterPro
DOMAIN/s: DNA topoisomerase, type IIA, subunit
A/C-terminal (InterPro:IPR002205), DNA topoisomerase, type
IIA, conserved site (InterPro:IPR018522), DNA
topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta
(InterPro:IPR013758), DNA topoisomerase, type IIA, subunit
B, domain 2 (InterPro:IPR013506), DNA topoisomerase, type
IIA, subunit A, alpha-helical (InterPro:IPR013757),
ATPase-like, ATP-binding domain (InterPro:IPR003594), DNA
topoisomerase, type IIA, subunit B/N-terminal, alpha-beta
(InterPro:IPR013759), DNA topoisomerase, type IIA, subunit
B/N-terminal (InterPro:IPR001241), Ribosomal protein S5
domain 2-type fold (InterPro:IPR020568), DNA topoisomerase
II, eukaryotic-type (InterPro:IPR001154), Ribosomal
protein S5 domain 2-type fold, subgroup
(InterPro:IPR014721), DNA topoisomerase, type IIA, central
(InterPro:IPR013760); BEST Arabidopsis thaliana protein
match is: DNA GYRASE B2 (TAIR:AT5G04130.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink)."
/db_xref="TAIR:AT3G23890"
/db_xref="Araport:AT3G23890"
intron_pos 193:0 (1/18)
intron_pos 291:2 (2/18)
intron_pos 314:0 (3/18)
intron_pos 404:1 (4/18)
intron_pos 470:0 (5/18)
intron_pos 540:0 (6/18)
intron_pos 578:0 (7/18)
intron_pos 616:0 (8/18)
intron_pos 671:0 (9/18)
intron_pos 785:0 (10/18)
intron_pos 829:2 (11/18)
intron_pos 946:0 (12/18)
intron_pos 1008:1 (13/18)
intron_pos 1025:0 (14/18)
intron_pos 1172:0 (15/18)
intron_pos 1234:1 (16/18)
intron_pos 1259:0 (17/18)
intron_pos 1286:1 (18/18)
BEGIN
1 MATKLPLQNS NAANVAKAPA KSRAAAGGKT IEEMYQKKSQ LEHILLRPDT YIGSIEKHTQ
61 TLWVYEKDEM VQRPVTYVPG LYKIFDEILV NAADNKQRDA KMDSVQVVID VEQNLISVCN
121 SGAGVPVEIH QEEGIYVPEM IFGHLLTSSN YDDNVKKTTG GRNGYGAKLT NIFSTEFIIE
181 TADGKRLKKY KQVFENNMGK KSEPVITKCN KSENWTKVTF KPDLKKFNMT ELEDDVVALM
241 SKRVFDIAGC LGKSVKVELN GKQIPVKSFT DYVDLYLSAA NKSRTEDPLP RLTEKVNDRW
301 EVCVSLSEGQ FQQVSFVNSI ATIKGGTHVD YVTSQITNHI VAAVNKKNKN ANVKAHNVKN
361 HLWVFVNALI DNPAFDSQTK ETLTLRQSSF GSKCELSEDF LKKVGKSGVV ENLLSWADFK
421 QNKDLKKSDG AKTGRVLVEK LDDAAEAGGK NSRLCTLILT EGDSAKSLAL AGRSVLGNNY
481 CGVFPLRGKL LNVREASTTQ ITNNKEIENL KKILGLKQNM KYENVNSLRY GQMMIMTDQD
541 HDGSHIKGLL INFIHSFWPS LLQVPSFLVE FITPIVKATR KGTKKVLSFY SMPEYEEWKE
601 SLKGNATGWD IKYYKGLGTS TAEEGKEYFS NLGLHKKDFV WEDEQDGEAI ELAFSKKKIE
661 ARKNWLSSYV PGNHLDQRQP KVTYSDFVNK ELILFSMADL QRSIPSMVDG LKPGQRKILF
721 VAFKKIARKE MKVAQLVGYV SLLSAYHHGE QSLASAIIGM AQDYVGSNNI NLLLPNGQFG
781 TRTSGGKDSA SARYIFTKLS PVTRILFPKD DDLLLDYLNE DGQRIEPTWY MPIIPTVLVN
841 GAEGIGTGWS TFIPNYNPRE IVANVRRLLN GESMVPMDPW YRGFKGTIEK TASKEGGCTY
901 TITGLYEEVD ETTIRITELP IRRWNDDYKN FLQSLKTDNG APFFQDVKAY NDEKSVDFDL
961 ILSEENMLAA RQEGFLKKFK LTTTIATSNM HLFDKKGVIK KYVTPEQILE EFFDLRFEYY
1021 EKRKETVVKN MEIELLKLEN KARFILAVLS GEIIVNKRKK ADIVEDLRQK GFTPFPRKAE
1081 SVEAAIAGAV DDDAAEEPEE ILVDPESSSS YIPGSEYDYL LAMAIASLTI EKVEELLADR
1141 DKMIIAVADM KKTTPKSLWL SDLESLDKEL EKLDLKDAQV QQAIEAAQKK IRAKSGAAVK
1201 VKRQAPKKPA PKKTTKKASE SETTEASYSA MDTDNNVAEV VKPKGRQGAK KKAPAAAKEV
1261 EEDEMLDLAQ RLAQYNFGSA PADSSKTAET SKAIAVDDDD DDVVVEVAPV KKGGRKPAAT
1321 KAAKPPAAPR KRGKQTVAST EVLAIGVSPE KKVRKMRSSP FNKKSSSVMS RLADNKEEES
1381 SENVAGNSSS EKSGGDVSAI SRPQRANRRK MTYVLSDSES ESANDSEFDD IEDDEDDE
//