LOCUS AEE76826.1 1473 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana topoisomerase II protein.
ACCESSION CP002686-4459
PROTEIN_ID AEE76826.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="TOPII"
/locus_tag="AT3G23890"
/gene_synonym="ATTOPII"
/gene_synonym="topoisomerase II"
/gene_synonym="TOPOISOMERASE II"
/inference="Similar to RNA sequence,
EST:INSD:ES157796.1,INSD:EG517053.1,INSD:EL983326.1,
INSD:EH974714.1,INSD:EL056760.1,INSD:BP659888.1,
INSD:ES053244.1,INSD:EL983488.1,INSD:ES177213.1,
INSD:EL099567.1,INSD:CF773290.1,INSD:AV820203.1,
INSD:EG517086.1,INSD:ES006679.1,INSD:EH896711.1,
INSD:R83960.1,INSD:EL997926.1"
/inference="Similar to RNA sequence, mRNA:INSD:L21015.1"
/note="topoisomerase II (TOPII); CONTAINS InterPro
DOMAIN/s: DNA topoisomerase, type IIA, subunit
A/C-terminal (InterPro:IPR002205), DNA topoisomerase, type
IIA, conserved site (InterPro:IPR018522), DNA
topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta
(InterPro:IPR013758), DNA topoisomerase, type IIA, subunit
A, alpha-helical (InterPro:IPR013757), DNA topoisomerase,
type IIA, subunit B, domain 2 (InterPro:IPR013506),
ATPase-like, ATP-binding domain (InterPro:IPR003594), DNA
topoisomerase, type IIA, subunit B/N-terminal, alpha-beta
(InterPro:IPR013759), DNA topoisomerase, type IIA, subunit
B/N-terminal (InterPro:IPR001241), Ribosomal protein S5
domain 2-type fold (InterPro:IPR020568), DNA topoisomerase
II, eukaryotic-type (InterPro:IPR001154), DNA
topoisomerase, type IIA, central (InterPro:IPR013760);
BEST Arabidopsis thaliana protein match is: DNA GYRASE B2
(TAIR:AT5G04130.1); Has 46226 Blast hits to 43639 proteins
in 5982 species: Archae - 169; Bacteria - 28615; Metazoa -
2871; Fungi - 1392; Plants - 616; Viruses - 201; Other
Eukaryotes - 12362 (source: NCBI BLink)."
/db_xref="TAIR:AT3G23890"
/db_xref="Araport:AT3G23890"
intron_pos 193:0 (1/19)
intron_pos 291:2 (2/19)
intron_pos 314:0 (3/19)
intron_pos 404:1 (4/19)
intron_pos 470:0 (5/19)
intron_pos 540:0 (6/19)
intron_pos 578:0 (7/19)
intron_pos 616:0 (8/19)
intron_pos 671:0 (9/19)
intron_pos 785:0 (10/19)
intron_pos 829:2 (11/19)
intron_pos 946:0 (12/19)
intron_pos 1008:1 (13/19)
intron_pos 1025:0 (14/19)
intron_pos 1172:0 (15/19)
intron_pos 1234:1 (16/19)
intron_pos 1269:1 (17/19)
intron_pos 1294:0 (18/19)
intron_pos 1321:1 (19/19)
BEGIN
1 MATKLPLQNS NAANVAKAPA KSRAAAGGKT IEEMYQKKSQ LEHILLRPDT YIGSIEKHTQ
61 TLWVYEKDEM VQRPVTYVPG LYKIFDEILV NAADNKQRDA KMDSVQVVID VEQNLISVCN
121 SGAGVPVEIH QEEGIYVPEM IFGHLLTSSN YDDNVKKTTG GRNGYGAKLT NIFSTEFIIE
181 TADGKRLKKY KQVFENNMGK KSEPVITKCN KSENWTKVTF KPDLKKFNMT ELEDDVVALM
241 SKRVFDIAGC LGKSVKVELN GKQIPVKSFT DYVDLYLSAA NKSRTEDPLP RLTEKVNDRW
301 EVCVSLSEGQ FQQVSFVNSI ATIKGGTHVD YVTSQITNHI VAAVNKKNKN ANVKAHNVKN
361 HLWVFVNALI DNPAFDSQTK ETLTLRQSSF GSKCELSEDF LKKVGKSGVV ENLLSWADFK
421 QNKDLKKSDG AKTGRVLVEK LDDAAEAGGK NSRLCTLILT EGDSAKSLAL AGRSVLGNNY
481 CGVFPLRGKL LNVREASTTQ ITNNKEIENL KKILGLKQNM KYENVNSLRY GQMMIMTDQD
541 HDGSHIKGLL INFIHSFWPS LLQVPSFLVE FITPIVKATR KGTKKVLSFY SMPEYEEWKE
601 SLKGNATGWD IKYYKGLGTS TAEEGKEYFS NLGLHKKDFV WEDEQDGEAI ELAFSKKKIE
661 ARKNWLSSYV PGNHLDQRQP KVTYSDFVNK ELILFSMADL QRSIPSMVDG LKPGQRKILF
721 VAFKKIARKE MKVAQLVGYV SLLSAYHHGE QSLASAIIGM AQDYVGSNNI NLLLPNGQFG
781 TRTSGGKDSA SARYIFTKLS PVTRILFPKD DDLLLDYLNE DGQRIEPTWY MPIIPTVLVN
841 GAEGIGTGWS TFIPNYNPRE IVANVRRLLN GESMVPMDPW YRGFKGTIEK TASKEGGCTY
901 TITGLYEEVD ETTIRITELP IRRWNDDYKN FLQSLKTDNG APFFQDVKAY NDEKSVDFDL
961 ILSEENMLAA RQEGFLKKFK LTTTIATSNM HLFDKKGVIK KYVTPEQILE EFFDLRFEYY
1021 EKRKETVVKN MEIELLKLEN KARFILAVLS GEIIVNKRKK ADIVEDLRQK GFTPFPRKAE
1081 SVEAAIAGAV DDDAAEEPEE ILVDPESSSS YIPGSEYDYL LAMAIASLTI EKVEELLADR
1141 DKMIIAVADM KKTTPKSLWL SDLESLDKEL EKLDLKDAQV QQAIEAAQKK IRAKSGAAVK
1201 VKRQAPKKPA PKKTTKKASE SETTEASYSA MDTDNNVAEV VKPKARQGAK KKASESETTE
1261 ASHSAMDTDN NVAEVVKPKG RQGAKKKAPA AAKEVEEDEM LDLAQRLAQY NFGSAPADSS
1321 KTAETSKAIA VDDDDDDVVV EVAPVKKGGR KPAATKAAKP PAAPRKRGKQ TVASTEVLAI
1381 GVSPEKKVRK MRSSPFNKKS SSVMSRLADN KEEESSENVA GNSSSEKSGG DVSAISRPQR
1441 ANRRKMTYVL SDSESESAND SEFDDIEDDE DDE
//