LOCUS AEE76717.1 264 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana DNA ligase IV-binding protein protein.
ACCESSION CP002686-4308
PROTEIN_ID AEE76717.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="XRCC4"
/locus_tag="AT3G23100"
/gene_synonym="homolog of human DNA ligase iv-binding
protein XRCC4"
/gene_synonym="homolog of X-ray repair cross complementing
4"
/inference="Similar to RNA sequence,
EST:INSD:EL205819.1,INSD:DR252554.1,INSD:ES118859.1,
INSD:EG501572.1,INSD:DR381371.1,INSD:EG501577.1,
INSD:EG501575.1,INSD:EG501571.1,INSD:ES147180.1,
INSD:EG501561.1,INSD:ES061480.1,INSD:ES038030.1,
INSD:EG528730.1,INSD:EG529353.1,INSD:EG528731.1,
INSD:EG501560.1,INSD:EL244514.1,INSD:EG528729.1,
INSD:EG529354.1,INSD:EG501562.1,INSD:EG528732.1,
INSD:BP864406.1,INSD:EG529367.1,INSD:EH967258.1,
INSD:DR252555.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AF233528.2,INSD:BT021921.1,INSD:AK175267.1,
INSD:BT020394.1,INSD:BX826083.1,INSD:BX825789.1"
/note="homolog of human DNA ligase iv-binding protein
XRCC4 (XRCC4); FUNCTIONS IN: protein C-terminus binding;
INVOLVED IN: double-strand break repair, metabolic
process, DNA recombination; LOCATED IN: nucleus; EXPRESSED
IN: 15 plant structures; EXPRESSED DURING: 6 growth
stages; CONTAINS InterPro DOMAIN/s: Carbamoyl phosphate
synthetase, large subunit, ATP-binding
(InterPro:IPR005479), DNA double-strand break repair and
VJ recombination XRCC4, C-terminal (InterPro:IPR014751),
DNA double-strand break repair and VJ recombination XRCC4
(InterPro:IPR010585); BEST Arabidopsis thaliana protein
match is: DNA double-strand break repair and VJ
recombination XRCC4 (TAIR:AT1G61410.1); Has 189 Blast hits
to 182 proteins in 54 species: Archae - 0; Bacteria - 3;
Metazoa - 88; Fungi - 4; Plants - 48; Viruses - 0; Other
Eukaryotes - 46 (source: NCBI BLink)."
/db_xref="TAIR:AT3G23100"
/db_xref="Araport:AT3G23100"
intron_pos 64:1 (1/4)
intron_pos 112:0 (2/4)
intron_pos 155:0 (3/4)
intron_pos 196:0 (4/4)
BEGIN
1 MIGVDSKSSS TTFIETMVES EKTKHTCLRL EISGADPIFV KGTWHNSRFD ISVTDGSSSW
61 ICNATEEEVA ERAAQWDQPV SEYLKLAEQY LGFQQPNSVY SFSDALEGSK RLSWTFEKEG
121 TKLEWRWKCK PSDDSKKITV GILDFLMEAN IRLSEEVVNK TRSFEKMRSE AERCLAQGEK
181 LCDEKTEFES ATYAKFLSVL NAKKAKLRAL RDKEDSVRVV EEEESTDKAE SFESGRSDDE
241 KSEEEASKKA TSSKARGGKR AARS
//