LOCUS AEE76629.1 1555 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana time for coffee protein.
ACCESSION CP002686-4188
PROTEIN_ID AEE76629.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="TIC"
/locus_tag="AT3G22380"
/gene_synonym="TIME FOR COFFEE"
/inference="Similar to RNA sequence,
EST:INSD:EG458940.1,INSD:AV554934.1,INSD:BU636477.1,
INSD:EG457225.1,INSD:EG458944.1,INSD:ES029010.1,
INSD:EG482048.1,INSD:EG477609.1,INSD:EG473509.1,
INSD:EG502928.1,INSD:AA728552.1,INSD:EH853559.1,
INSD:EL032364.1,INSD:EL335201.1,INSD:N96334.1,
INSD:AV827482.1,INSD:EG457810.1,INSD:EG453461.1,
INSD:EL982113.1,INSD:EG458054.1,INSD:EG482047.1,
INSD:EG508912.1,INSD:AV560690.1,INSD:EH991106.1,
INSD:EL023657.1,INSD:ES016945.1,INSD:ES204722.1,
INSD:T04629.1,INSD:EH876436.1,INSD:EG457794.1,
INSD:EL021324.1,INSD:AV528964.1,INSD:EL321336.1,
INSD:ES027505.1,INSD:ES201706.1,INSD:EG457139.1,
INSD:EL333341.1,INSD:EG482032.1,INSD:EH808243.1,
INSD:AV528188.1,INSD:EL092837.1,INSD:ES171719.1,
INSD:AV554885.1,INSD:ES054623.1,INSD:EG473487.1,
INSD:W43429.1,INSD:EG507523.1,INSD:EL111681.1,
INSD:AV547026.1,INSD:ES088280.1,INSD:EG425863.1,
INSD:EG507524.1,INSD:ES089572.1,INSD:EL083639.1,
INSD:AW004157.1,INSD:EG460929.1,INSD:T04486.1,
INSD:EG457138.1,INSD:EH975906.1,INSD:EG477631.1,
INSD:EL159608.1,INSD:EG454224.1,INSD:EG458933.1,
INSD:EL215948.1,INSD:EL990121.1,INSD:EH850048.1,
INSD:EG457809.1,INSD:EL039486.1,INSD:AV528817.1,
INSD:CD532896.1,INSD:EL146161.1,INSD:EG462454.1,
INSD:EL109124.1,INSD:ES187238.1,INSD:EG459235.1,
INSD:EG457821.1,INSD:EH872651.1,INSD:EL176343.1,
INSD:AV831580.1,INSD:EG462409.1,INSD:EG454242.1,
INSD:EL138729.1,INSD:EL061964.1,INSD:ES115995.1,
INSD:ES180158.1,INSD:EH905771.1,INSD:EG460818.1,
INSD:EG453462.1,INSD:BE526434.1,INSD:EG458934.1,
INSD:AV546170.1,INSD:EL060526.1,INSD:EG462453.1,
INSD:EG462456.1,INSD:AV528927.1,INSD:EG462457.1,
INSD:EH935726.1,INSD:EL241813.1,INSD:F14440.1,
INSD:EH994650.1,INSD:ES090139.1,INSD:EH936806.1,
INSD:ES147831.1,INSD:T88118.1,INSD:EH910550.1,
INSD:EG458057.1,INSD:EL020215.1,INSD:AV546371.1,
INSD:EL117038.1,INSD:DR359115.1,INSD:EL044550.1,
INSD:EG482033.1,INSD:EL994084.1,INSD:ES191859.1,
INSD:EG509222.1,INSD:EG459596.1,INSD:EH893660.1,
INSD:AV523282.1,INSD:EL027967.1,INSD:EG454223.1,
INSD:ES008624.1,INSD:EL217927.1,INSD:EL026005.1,
INSD:EG440581.1,INSD:EG458942.1,INSD:EG457829.1,
INSD:EG457795.1,INSD:EG502927.1,INSD:EL152993.1,
INSD:DR359116.1,INSD:EG458945.1,INSD:EL184899.1,
INSD:EG425874.1,INSD:ES154629.1,INSD:AV529584.1,
INSD:EG459236.1,INSD:EG457226.1,INSD:EG508913.1,
INSD:AV827237.1,INSD:EG462408.1,INSD:ES042928.1,
INSD:ES164702.1,INSD:EH989902.1,INSD:EG467644.1,
INSD:EG454240.1,INSD:ES138135.1,INSD:ES206801.1"
/note="TIME FOR COFFEE (TIC); FUNCTIONS IN:
molecular_function unknown; INVOLVED IN: regulation of
circadian rhythm; LOCATED IN: nucleus; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: TIC-like
(TAIR:AT3G63180.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink)."
/db_xref="TAIR:AT3G22380"
/db_xref="Araport:AT3G22380"
intron_pos 34:1 (1/12)
intron_pos 214:1 (2/12)
intron_pos 281:0 (3/12)
intron_pos 379:1 (4/12)
intron_pos 480:2 (5/12)
intron_pos 494:0 (6/12)
intron_pos 526:0 (7/12)
intron_pos 600:1 (8/12)
intron_pos 622:2 (9/12)
intron_pos 645:0 (10/12)
intron_pos 755:0 (11/12)
intron_pos 1549:1 (12/12)
BEGIN
1 MDRNREARRV PMAAAGNGLS RRRHRAGSFR DSPEEEGPVE LPEAARLRDR GGSNKKDRDR
61 ERDRDRERER ERDRERDRLN SRSKRRRGER LMMVHGNLDD GGDDSSEESV NDDEEYDDGG
121 VGPPSSLKML PPTSNNISAA SFSSSLSNHH NGGSGNLHHH HHSHNNNHQR KNNFPPTKVF
181 RSSPSPAPVS PLVSTWKAAD EMIGVSVPRK ARSACTKRPH ESWASSTTGG GVFASGEQIH
241 RQISSTSPAN RVSPASILAS PSPPAPTSPS SSSISVRKKL PSGTKQKPLP PKSSSSKLSS
301 PVAVQDEIEI EIAEVLYGMM RMPSTSKQEA AGNDLTEAAK STVEVKSRVS SPISNPQTLP
361 QSSITLAANS SSSNVSAIAP KRKKPRHVKY EDDNSSRVTT IKSEAEAPSK SQVPFSNQLK
421 SSGSGEGNSS VLDSIIPLTR ESNASLDSEK KENNLSKDET ILPKVESSSG FRSDGEGAKS
481 SSPEKEKFEI DLMAPPPVRS SSERGGEMME CVAAEAKPKV TEVETEAKPL LKEDRSDPAI
541 HDSQEKKRPR MVAEAEHHKF ERNCELKLDL DKSDHVGLVN KHHVQKPPPQ QQLSVPDKTA
601 QASHLPLHMS MPGWPGGLPT MGYMAPTQGV VPTDTSSLSA AAMQPPPHLL FNQPRPKRCA
661 THCYIARNIQ SHQQFTKMNP FWPAAAGSAP MYGTKACNLS LMPPTELQGS VLGRSSNPVQ
721 DKNSQSTSKS SETAQRNQLM LQQALPPGAA NSILHGPTFI FPLGQQPHAA ATIAAASVRP
781 PNSGITSSGP TATSTSMNGS ASATPAGAPT MSFSYPAMPG NETQYLAILQ NNGYPFPVPA
841 HVGAQPAYRG APGQPMPFFN GSFYSSQMIQ PPHHQPQKQH QQQLTGQMLQ SHAPNNQNGS
901 ASTGSSAAQK HLQNQQLRPP INHGNSQGFP THKVQSQPLN FQQRQQPREN ATQHSETVGE
961 DSPSTADSRG SRSNVAYGQN YGMQMQPTNL GLMSSPAPGG GVVGSSSSHG EKKSQQQVSK
1021 AGVESFQSPG YAMTFATFNG ANTAPTLNMS SIAQNHAMFH SMPEAARQGY QMMAAQAAQQ
1081 KMNYGASLED GKSGSIGGAA TANNTPEEQR KSGGGAIGKT SGGNGGQSIA FSNKQDLADA
1141 SVSAVTSGSI VDSSSRLLNL GSALPQSSGS LPTSHHQQLL QQQQQQHMQR SQSQQPYTTM
1201 YLQKQQRYAT SVAASAARTK GPVVSNGSGF PDHNMTTSPA GTTKFANANS GFPQNLVQSS
1261 SNQVQSQQWK NNSPRTTNTT QAQSPSMLSP STSVAAASSL RNIPHKQQSR PQQSQISFAA
1321 NSKPMTSGSP MQQVQGGTNH QAPSPPMLVG SPSTSSVSKN ASGSPRTTAS ASSAANKGGQ
1381 ASTTTHSASQ PSKNLQPASA ASSAGGRNNG PSVLGNPTTS SGSKSQQQQQ LPKHGLQPQA
1441 QLFFSNPYMQ AQHQHQQQQI TISPSGGYYI QRHQQQSGSA PAVPVTGAVT ATSDPAKAIA
1501 AASAANNMKG GGGMGKTQQH QLGPPGFTNV HAVSSAVQVK PVDQKQQAAC AGETK
//