LOCUS AEE76616.1 782 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Topoisomerase II-associated protein
PAT1 protein.
ACCESSION CP002686-4172
PROTEIN_ID AEE76616.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G22270"
/inference="Similar to RNA sequence,
EST:INSD:BP837145.1,INSD:EL077240.1,INSD:EG517072.1,
INSD:BP645475.1,INSD:EL236765.1,INSD:BP831412.1,
INSD:EG517073.1,INSD:AV518819.1,INSD:ES055264.1,
INSD:EH990820.1,INSD:AV523696.1,INSD:ES054320.1,
INSD:AV807925.1,INSD:EL029220.1,INSD:EG437429.1,
INSD:AU237452.1,INSD:EG517080.1,INSD:ES012343.1,
INSD:EL312897.1,INSD:AV522952.1,INSD:EL266864.1,
INSD:EG437418.1,INSD:AV529052.1,INSD:EG517079.1,
INSD:EL337217.1,INSD:AU228523.1,INSD:AV529439.1,
INSD:CB264435.1,INSD:ES092475.1,INSD:BP810222.1,
INSD:ES027218.1,INSD:AV523391.1,INSD:AV528510.1,
INSD:AV529440.1"
/inference="Similar to RNA sequence,
mRNA:INSD:EF183448.1,INSD:DQ487675.1,INSD:DQ652773.1,
INSD:AK228960.1"
/note="Topoisomerase II-associated protein PAT1; BEST
Arabidopsis thaliana protein match is: Topoisomerase
II-associated protein PAT1 (TAIR:AT4G14990.1); Has 263
Blast hits to 260 proteins in 68 species: Archae - 0;
Bacteria - 0; Metazoa - 98; Fungi - 15; Plants - 121;
Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink)."
/db_xref="TAIR:AT3G22270"
/db_xref="Araport:AT3G22270"
intron_pos 19:1 (1/4)
intron_pos 71:0 (2/4)
intron_pos 90:0 (3/4)
intron_pos 115:1 (4/4)
BEGIN
1 MERSDSRDLY NFVRASSLDK NSTLFDASQY EFFGQNLDDM ELGGLDDDGV IAPVLGHADD
61 DEYHLFDKGE GAGLGSLSDM DDLATTFAKL NRVVTGPKHP GVIGDRGSGS FSRESSSATD
121 WTQDAELTSW LDEQDQEAKR WSSQPQSFAH SKPLYRTSSY PQQQPQLQHY NSEPIILPES
181 NFTSFPPPGN RSPQASPGNL HRAPSLPGGS QLTYSAPSPL SNSGFHLSGL SQGPHYGGNL
241 TRYASCGPTL GNMVQPHWVT DPGHLHGDHS GLLHNLVQQQ HQQLPPRNAI MSQHLLALQQ
301 RQSYAQLAAL QSQLYSSYPS PSRKVPFGVG EVREHKHKSS HRSRKNRGLS QQTSDAASQK
361 SETGLQFRSK HMTSEEIESI LKMQHSNSHS NDPYVNDYYH QAKLAKKSAG SKAISHFYPA
421 QLKDHQPRSR NSSEQHPQVH VDALGKITLP SVRRPHALLE VDSSPGFNDG SGDHKGSGKH
481 LEQEPLVAAR VTIEDALGVL IDIVDIDRTL QNTRPQDGGA QLKRKRQILL EGLATALQLA
541 DPFSKTGQKS GMTAKDDIVF LRIATLPKGR KLLTKYLQLL VPGTENARVV CMAIFRHLRF
601 LFGGLPSDTL AAETISNLAK AVTVCVQAMD LRALSACLAA VVCSSEQPPL RPIGSSAGDG
661 ASVVLISLLE RAAEVVVVPR VMHGNSNDGL WRASFDEFFN LLTKYCRSKY DTIRGQNQGS
721 AADVLELAIK REMPAELLRA SLRHTNDDQR NYLLNFGRKP SAISESASHA RGGQINSESV
781 RG
//