LOCUS AEE76477.1 339 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs)
family protein protein.
ACCESSION CP002686-3975
PROTEIN_ID AEE76477.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G21215"
/inference="Similar to RNA sequence,
EST:INSD:AV805143.1,INSD:ES007733.1,INSD:EL154901.1,
INSD:ES010244.1,INSD:DR255742.1,INSD:EL188037.1,
INSD:EL980914.1,INSD:EH946889.1,INSD:EL150385.1,
INSD:EH917939.1,INSD:AV553817.1,INSD:DR255741.1,
INSD:EL121616.1,INSD:ES194684.1,INSD:ES124687.1,
INSD:AV815222.1,INSD:ES207246.1,INSD:EH883452.1,
INSD:BX836639.1,INSD:ES183593.1,INSD:AV783191.1,
INSD:BP576934.1,INSD:EH917326.1,INSD:EL340286.1,
INSD:EL185643.1,INSD:ES179398.1,INSD:AV827186.1,
INSD:BP798576.1,INSD:EL035626.1,INSD:EL061328.1,
INSD:EL190185.1,INSD:EL300379.1,INSD:EL969348.1,
INSD:BX835402.1,INSD:EH963728.1,INSD:EL987218.1,
INSD:EL093954.1,INSD:EH897480.1,INSD:EL267997.1,
INSD:ES032690.1,INSD:BP618511.1,INSD:BP817781.1,
INSD:ES010450.1,INSD:EL043041.1,INSD:EH932228.1,
INSD:EG434090.1,INSD:EG434094.1,INSD:BP805059.1,
INSD:AV527793.1,INSD:AU239026.1,INSD:EG434093.1,
INSD:EG434091.1,INSD:EL969470.1,INSD:ES189414.1"
/note="RNA-binding (RRM/RBD/RNP motifs) family protein;
FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
acid binding; CONTAINS InterPro DOMAIN/s: RNA recognition
motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding,
alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis
thaliana protein match is: RNA-binding (RRM/RBD/RNP
motifs) family protein (TAIR:AT2G42240.1); Has 5454 Blast
hits to 2765 proteins in 341 species: Archae - 4; Bacteria
- 269; Metazoa - 1333; Fungi - 651; Plants - 2326; Viruses
- 357; Other Eukaryotes - 514 (source: NCBI BLink)."
/db_xref="TAIR:AT3G21215"
/db_xref="Araport:AT3G21215"
intron_pos 58:0 (1/8)
intron_pos 118:0 (2/8)
intron_pos 143:1 (3/8)
intron_pos 186:2 (4/8)
intron_pos 225:0 (5/8)
intron_pos 255:2 (6/8)
intron_pos 279:0 (7/8)
intron_pos 306:2 (8/8)
BEGIN
1 MAGAGIHPYH QQWPPAGAPP PPAAVSSAAP PHPPPIHHHP PPPPVLVDNH NRPPYDELRT
61 IFIAGLPDDV KERELLNLLR WLPGYEASQV NFKGEKPMGF ALFSTAQFAM AAKDTLQHMV
121 FDAESKSVIH TEMAKKNLFV KRGIVGDSNA YDQSKRLRTG GDCTHSVYSP SPFHPPPPPV
181 WGPPHGYMAP APPPYDPYAG YHAPPVPMPT PPPIAAPSSY VPVQNIKDNP PCNTLFIGNL
241 GENINEEELR SLLSAQPGFK QMKILRQERH TVCFIEFEDV NSATNVHHNL QGAVIPSSGS
301 IGMRIQYSKN PYGKRKEGGG YSFFPSPSAN GAQGALTYQ
//