LOCUS AEE76471.1 295 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana ZIM-like 1 protein.
ACCESSION CP002686-3967
PROTEIN_ID AEE76471.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="ZML1"
/locus_tag="AT3G21175"
/gene_synonym="GATA TRANSCRIPTION FACTOR 24"
/gene_synonym="GATA24"
/gene_synonym="TIFY2B"
/gene_synonym="ZIM LIKE 1"
/gene_synonym="ZIM-like 1"
/inference="Similar to RNA sequence,
EST:INSD:AU230284.1,INSD:BP852544.1,INSD:AV827719.1,
INSD:DR195779.1,INSD:AA605423.1,INSD:DR195773.1,
INSD:DR195777.1,INSD:AV532515.1,INSD:DR195772.1,
INSD:ES020238.1,INSD:ES187210.1,INSD:EL034740.1,
INSD:EH854051.1,INSD:DR195776.1,INSD:BX837801.1,
INSD:DR195778.1,INSD:EL308014.1,INSD:EH960693.1,
INSD:R90505.1,INSD:DR372033.1,INSD:AV799095.1,
INSD:ES163111.1,INSD:EL334099.1,INSD:EL072130.1,
INSD:BP817343.1,INSD:DR298255.1,INSD:BP607307.1,
INSD:CB257880.1,INSD:BP565110.1,INSD:EL990180.1,
INSD:BP611976.1,INSD:BP830639.1,INSD:AU239020.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY042817.1,INSD:AK118169.1,INSD:AY064628.1,
INSD:BX825570.1"
/note="ZIM-like 1 (ZML1); FUNCTIONS IN: sequence-specific
DNA binding, zinc ion binding, sequence-specific DNA
binding transcription factor activity; INVOLVED IN:
regulation of transcription, DNA-dependent; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type
(InterPro:IPR013088), Tify (InterPro:IPR010399), Zinc
finger, GATA-type (InterPro:IPR000679), CCT domain
(InterPro:IPR010402); BEST Arabidopsis thaliana protein
match is: ZIM-LIKE 2 (TAIR:AT1G51600.2); Has 2151 Blast
hits to 2146 proteins in 203 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 499; Plants - 1598; Viruses - 0;
Other Eukaryotes - 54 (source: NCBI BLink)."
/db_xref="TAIR:AT3G21175"
/db_xref="Araport:AT3G21175"
intron_pos 99:0 (1/6)
intron_pos 128:0 (2/6)
intron_pos 172:2 (3/6)
intron_pos 216:2 (4/6)
intron_pos 252:0 (5/6)
intron_pos 276:0 (6/6)
BEGIN
1 MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG
61 NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ AVLLLLGGRE VPHTLPTTLG
121 SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF
181 TSAKSSNDDS GSTGSDWGSN QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL
241 CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ
//