LOCUS AEE76470.1 297 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana ZIM-like 1 protein.
ACCESSION CP002686-3966
PROTEIN_ID AEE76470.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="ZML1"
/locus_tag="AT3G21175"
/gene_synonym="GATA TRANSCRIPTION FACTOR 24"
/gene_synonym="GATA24"
/gene_synonym="TIFY2B"
/gene_synonym="ZIM LIKE 1"
/gene_synonym="ZIM-like 1"
/inference="Similar to RNA sequence,
EST:INSD:AU230284.1,INSD:BP852544.1,INSD:DR195779.1,
INSD:AA605423.1,INSD:AV563178.1,INSD:DR195773.1,
INSD:DR195777.1,INSD:AV532515.1,INSD:DR195772.1,
INSD:ES020238.1,INSD:ES187210.1,INSD:EL034740.1,
INSD:EH854051.1,INSD:DR195778.1,INSD:EL308014.1,
INSD:EH960693.1,INSD:R90505.1,INSD:DR372033.1,
INSD:AV799095.1,INSD:ES163111.1,INSD:DR751623.1,
INSD:EL334099.1,INSD:EL072130.1,INSD:BP817343.1,
INSD:BP607307.1,INSD:BP565110.1,INSD:EL990180.1,
INSD:DR195774.1,INSD:BP611976.1,INSD:AU239020.1,
INSD:BP830639.1,INSD:DR751632.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY085109.1,INSD:AK118169.1,INSD:AB119060.1,
INSD:BX823166.1"
/note="ZIM-like 1 (ZML1); FUNCTIONS IN: sequence-specific
DNA binding, sequence-specific DNA binding transcription
factor activity, zinc ion binding; INVOLVED IN: regulation
of transcription, DNA-dependent; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Zinc finger, NHR/GATA-type
(InterPro:IPR013088), Tify (InterPro:IPR010399), CCT
domain (InterPro:IPR010402), Zinc finger, GATA-type
(InterPro:IPR000679); BEST Arabidopsis thaliana protein
match is: ZIM-LIKE 2 (TAIR:AT1G51600.2); Has 2137 Blast
hits to 2132 proteins in 202 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 496; Plants - 1587; Viruses - 0;
Other Eukaryotes - 54 (source: NCBI BLink)."
/db_xref="TAIR:AT3G21175"
/db_xref="Araport:AT3G21175"
intron_pos 99:0 (1/6)
intron_pos 130:0 (2/6)
intron_pos 174:2 (3/6)
intron_pos 218:2 (4/6)
intron_pos 254:0 (5/6)
intron_pos 278:0 (6/6)
BEGIN
1 MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG
61 NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ AVLLLLGGRE VPHTLPTTLG
121 SPHQNNRVLG LSGTPQRLSV PQRLASLLRF REKRKGRNFD KTIRYTVRKE VALRMQRKKG
181 QFTSAKSSND DSGSTGSDWG SNQSWAVEGT ETQKPEVLCR HCGTSEKSTP MMRRGPDGPR
241 TLCNACGLMW ANKGTLRDLS KVPPPQTPQH LSLNKNEDAN LEADQMMEVT GDISNTQ
//