LOCUS AEE76460.2 602 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs)
family protein protein.
ACCESSION CP002686-3953
PROTEIN_ID AEE76460.2
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G21100"
/inference="Similar to RNA sequence,
EST:INSD:ES104905.1,INSD:AA585786.1,INSD:DR276327.1,
INSD:ES150230.1,INSD:DR276328.1,INSD:AU228830.1,
INSD:T22473.1,INSD:ES152821.1,INSD:EH830265.1,
INSD:DR381165.1,INSD:ES079222.1,INSD:BP607294.1,
INSD:DR276326.1"
/inference="Similar to RNA sequence, mRNA:INSD:DQ108741.1"
/note="RNA-binding (RRM/RBD/RNP motifs) family protein;
FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
acid binding; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN:
shoot apex, embryo, leaf whorl, flower, seed; EXPRESSED
DURING: F mature embryo stage, petal differentiation and
expansion stage, E expanded cotyledon stage, D bilateral
stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif,
RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta
plait (InterPro:IPR012677); BEST Arabidopsis thaliana
protein match is: RNA-binding (RRM/RBD/RNP motifs) family
protein (TAIR:AT1G51520.2); Has 234 Blast hits to 230
proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa
- 25; Fungi - 0; Plants - 205; Viruses - 0; Other
Eukaryotes - 4 (source: NCBI BLink)."
/db_xref="TAIR:AT3G21100"
/db_xref="Araport:AT3G21100"
intron_pos 282:2 (1/6)
intron_pos 340:2 (2/6)
intron_pos 400:2 (3/6)
intron_pos 435:1 (4/6)
intron_pos 516:1 (5/6)
intron_pos 551:2 (6/6)
BEGIN
1 MDPGDPTSIL FTKIRTLEPD FASKIIGYLL LQDLGKTDLM RLALGPETLL QSVCLKAKSA
61 LGLSSNGSSS ASSPLNPISR PINIHRHSLS HSSPGNGFSR NPLSPSFATP GSLGSNPNMI
121 SSPFQASSSL FASDGAAAGD STGNGDFLDE QQLGNYLSFL NESSSKNNDE SLDPFGFSAD
181 NGDAHLHKRS FSASDACFGS EEPGFGGGGY NRFLHGGLGD DFDSPGGFGS PDYVSRQQEE
241 IVRMKMAQRQ RMAAAQYLAA TGSPMSYEKG LNFLLHQRNA HRSGAGQFGE EGYWFGSPGR
301 HERDEFMGMG DKSNSASKQI YLTFPADSSF TDEDVSNYFG NFGPVQDVRI PYQQKRMFGF
361 VTFLHSETVR IILARGNPHF ICDSRVLVKP YKEKGRILEK RQQQQLLQQM ERGNFSPGSS
421 PSGMDSRDLF DSHLAPRMFS NTQEMMRRKA EQADLQQAIE FQRRRFLSLQ LPDMDSESFL
481 HHQRSLSIGS PVHFSPRVNQ SMLFRSESTS DEVFEGNGDS GHQSEATRAF LSDTGHNISQ
541 ERGYNSHLNK GQETSLENTL PDSFFASPSK TGETQHPEFE KENCATISVT TENKAASSLQ
601 SA
//