LOCUS AEE76250.1 723 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Homeodomain-like protein with RING/
FYVE/PHD-type zinc finger domain-containing protein protein.
ACCESSION CP002686-3651
PROTEIN_ID AEE76250.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="HAT3.1"
/locus_tag="AT3G19510"
/inference="Similar to RNA sequence,
EST:INSD:ES081862.1,INSD:BP598555.1,INSD:ES116832.1,
INSD:AW004416.1,INSD:BX841258.1,INSD:AI996258.1,
INSD:ES044529.1,INSD:BP618320.1,INSD:AU228990.1,
INSD:EH946259.1,INSD:ES075775.1"
/inference="Similar to RNA sequence,
mRNA:INSD:X69512.1,INSD:AK117105.1,INSD:BT005965.1"
/note="HAT3.1; FUNCTIONS IN: sequence-specific DNA
binding, DNA binding, transcription activator activity,
sequence-specific DNA binding transcription factor
activity; INVOLVED IN: positive regulation of
transcription, regulation of transcription, DNA-dependent;
LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 12 growth stages; CONTAINS InterPro
DOMAIN/s: Zinc finger, PHD-type, conserved site
(InterPro:IPR019786), Zinc finger, PHD-type
(InterPro:IPR001965), Homeobox (InterPro:IPR001356),
Homeodomain-like (InterPro:IPR009057), Zinc finger,
FYVE/PHD-type (InterPro:IPR011011), Zinc finger,
PHD-finger (InterPro:IPR019787), Homeodomain-related
(InterPro:IPR012287); BEST Arabidopsis thaliana protein
match is: pathogenesis related homeodomain protein A
(TAIR:AT4G29940.1); Has 21195 Blast hits to 13195 proteins
in 937 species: Archae - 172; Bacteria - 5087; Metazoa -
6772; Fungi - 2621; Plants - 1255; Viruses - 207; Other
Eukaryotes - 5081 (source: NCBI BLink)."
/db_xref="TAIR:AT3G19510"
/db_xref="Araport:AT3G19510"
intron_pos 210:2 (1/7)
intron_pos 266:0 (2/7)
intron_pos 307:1 (3/7)
intron_pos 345:0 (4/7)
intron_pos 531:0 (5/7)
intron_pos 628:0 (6/7)
intron_pos 658:0 (7/7)
BEGIN
1 MYKAVSKRVT RSSGSGLKQT NVDNGGEISP TVDRVSEQGK SSEAGSHMPT DANGNGHLHH
61 EIMDHGKGNE EQKPTPQTVK KDSNTNTKFS GSHRELVIGL PCRGQFEIHN RSRASTSSKR
121 LGGGGERNVL FASHKRAQRS KEDAGPSSVV ANSTPVGRPK KKNKTMNKGQ VREDDEYTRI
181 KKKLRYFLNR INYEQSLIDA YSLEGWKGSS LEKIRPEKEL ERATKEILRR KLKIRDLFQH
241 LDTLCAEGSL PESLFDTDGE ISSEDIFCAK CGSKDLSVDN DIILCDGFCD RGFHQYCLEP
301 PLRKEDIPPD DEGWLCPGCD CKDDSLDLLN DSLGTKFSVS DSWEKIFPEA AAALVGGGQN
361 LDCDLPSDDS DDEEYDPDCL NDNENDEDGS DDNEESENED GSSDETEFTS ASDEMIESFK
421 EGKDIMKDVM ALPSDDSEDD DYDPDAPTCD DDKESSNSDC TSDTEDLETS FKGDETNQQA
481 EDTPLEDPGR QTSQLQGDAI LESDVGLDDG PAGVSRRRNV ERLDYKKLYD EEYDNVPTSS
541 SDDDDWDKTA RMGKEDSESE DEGDTVPLKQ SSNAEDHTSK KLIRKSKRAD KKDTLEMPQE
601 GPGENGGSGE IEKSSSSACK QTDPKTQRLY ISFQENQYPD KATKESLAKE LQMTVKQVNN
661 WFKHRRWSIN SKPLVSEENV EKLKTGKEGE CETSVAGSSK QTMETESVAE KPTNTGSRKR
721 RRK
//