LOCUS AEE76196.1 435 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding protein 47B protein.
ACCESSION CP002686-3577
PROTEIN_ID AEE76196.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="RBP47B"
/locus_tag="AT3G19130"
/gene_synonym="ATRBP47B"
/gene_synonym="RNA-binding protein 47B"
/inference="Similar to RNA sequence,
EST:INSD:BE662781.1,INSD:AV541948.1,INSD:EG456557.1,
INSD:BP791975.1,INSD:BP809278.1,INSD:BP594745.1,
INSD:AV829987.1,INSD:DR289529.1,INSD:BP797460.1,
INSD:BP587141.1,INSD:BP803918.1,INSD:BP616677.1,
INSD:BP582439.1,INSD:EH967951.1,INSD:EL293678.1,
INSD:EG467926.1,INSD:BP665698.1,INSD:BP584974.1,
INSD:BP807755.1,INSD:DR350892.1,INSD:AV802311.1,
INSD:BP787481.1,INSD:AV786224.1,INSD:BP587561.1,
INSD:DR380096.1,INSD:BP830490.1,INSD:BP564789.1,
INSD:BP777840.1,INSD:EH974155.1,INSD:EH837178.1,
INSD:EG456556.1,INSD:Z34729.1,INSD:EL083038.1,
INSD:EL333459.1,INSD:BX839513.1,INSD:AV828172.1,
INSD:BP581719.1,INSD:EL284272.1,INSD:EL101046.1,
INSD:ES186911.1,INSD:BP580950.1,INSD:BP800903.1,
INSD:AV544450.1,INSD:DR381323.1,INSD:BP571207.1,
INSD:BP598408.1,INSD:BP575260.1,INSD:BE662772.1,
INSD:EL008895.1,INSD:EG467927.1,INSD:ES006174.1,
INSD:ES117287.1,INSD:BP567161.1,INSD:DR350893.1,
INSD:BX835647.1,INSD:BP857702.1,INSD:BP607918.1,
INSD:BP568413.1,INSD:BP563417.1,INSD:BP570465.1,
INSD:DR350894.1,INSD:BP810929.1,INSD:BP655462.1,
INSD:BP651263.1,INSD:CB185588.1,INSD:BP564053.1,
INSD:BP571155.1,INSD:AV824458.1,INSD:CF653023.1,
INSD:EL277914.1,INSD:AV556757.1,INSD:EL213472.1,
INSD:BP796862.1,INSD:EG466271.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY084821.1,INSD:BX823378.1,INSD:BX822397.1,
INSD:BT026489.1,INSD:BX823333.1,INSD:AK226472.1"
/note="RNA-binding protein 47B (RBP47B); FUNCTIONS IN: RNA
binding; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA
recognition motif, RNP-1 (InterPro:IPR000504),
Nucleotide-binding, alpha-beta plait (InterPro:IPR012677);
BEST Arabidopsis thaliana protein match is: RNA-binding
protein 47A (TAIR:AT1G49600.1); Has 37628 Blast hits to
21966 proteins in 866 species: Archae - 14; Bacteria -
2376; Metazoa - 18486; Fungi - 4600; Plants - 6856;
Viruses - 8; Other Eukaryotes - 5288 (source: NCBI
BLink)."
/db_xref="TAIR:AT3G19130"
/db_xref="Araport:AT3G19130"
intron_pos 134:0 (1/5)
intron_pos 295:1 (2/5)
intron_pos 323:0 (3/5)
intron_pos 366:2 (4/5)
intron_pos 398:0 (5/5)
BEGIN
1 MQTTNGSDST LATSGATPPN QQTPPPPQQW QQQQQQQQQW MAAMQYPPAA AMMMMQQQQM
61 LMYPHQYVPY NQGPYQQHHP QLHQYGSYQQ HQHQQHKAID RGSGDDVKTL WVGDLLHWMD
121 ETYLHSCFSH TGEVSSVKVI RNKLTSQSEG YGFVEFLSRA AAEEVLQNYS GSVMPNSDQP
181 FRINWASFST GEKRAVENGP DLSVFVGDLS PDVTDVLLHE TFSDRYPSVK SAKVVIDSNT
241 GRSKGYGFVR FGDENERSRA LTEMNGAYCS NRQMRVGIAT PKRAIANQQQ HSSQAVILAG
301 GHGSNGSMGY GSQSDGESTN ATIFVGGIDP DVIDEDLRQP FSQFGEVVSV KIPVGKGCGF
361 VQFADRKSAE DAIESLNGTV IGKNTVRLSW GRSPNKQWRG DSGQQWNGGY SRGHGYNNGG
421 GYANHHDSNN YHGEN
//