LOCUS AEE76193.1 455 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding protein protein.
ACCESSION CP002686-3574
PROTEIN_ID AEE76193.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="LARP6c"
/locus_tag="AT3G19090"
/gene_synonym="AtLARP6c"
/gene_synonym="La related protein 6c"
/inference="Similar to RNA sequence, EST:INSD:EL984097.1"
/note="RNA-binding protein; FUNCTIONS IN: RNA binding,
nucleotide binding, nucleic acid binding; INVOLVED IN: RNA
processing; LOCATED IN: ribonucleoprotein complex,
nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s:
Winged helix-turn-helix transcription repressor
DNA-binding (InterPro:IPR011991), RNA-binding protein
Lupus La (InterPro:IPR006630), Lupus La protein
(InterPro:IPR002344), RNA recognition motif, RNP-1
(InterPro:IPR000504), Nucleotide-binding, alpha-beta plait
(InterPro:IPR012677), Ataxin-2, C-terminal
(InterPro:IPR009818); BEST Arabidopsis thaliana protein
match is: RNA-binding protein (TAIR:AT2G43970.1); Has 912
Blast hits to 912 proteins in 142 species: Archae - 0;
Bacteria - 2; Metazoa - 538; Fungi - 65; Plants - 233;
Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink)."
/db_xref="TAIR:AT3G19090"
/db_xref="Araport:AT3G19090"
intron_pos 152:0 (1/9)
intron_pos 179:1 (2/9)
intron_pos 211:0 (3/9)
intron_pos 235:0 (4/9)
intron_pos 261:2 (5/9)
intron_pos 288:0 (6/9)
intron_pos 304:0 (7/9)
intron_pos 327:0 (8/9)
intron_pos 369:0 (9/9)
BEGIN
1 MAQMQREEVE SVTTEKKRLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PAPQVSPVSG
61 YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG GDPTAQHQHV HDPAAAFYIS
121 NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP
181 VSYIASTKKI KALTSNHHLV SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA
241 ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301 DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL
361 TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR SFGIGLGVSL GIPSLGSHES
421 SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL
//