LOCUS AEE76110.1 552 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana histone deacetylase 15 protein.
ACCESSION CP002686-3454
PROTEIN_ID AEE76110.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="HDA15"
/locus_tag="AT3G18520"
/gene_synonym="ATHDA15"
/gene_synonym="histone deacetylase 15"
/inference="Similar to RNA sequence,
EST:INSD:BP827964.1,INSD:ES139946.1,INSD:AU239064.1,
INSD:AV550266.1,INSD:CB254346.1,INSD:ES101730.1,
INSD:DR340464.1,INSD:AV536537.1,INSD:BP831187.1,
INSD:AV536558.1,INSD:EL114807.1,INSD:AV538113.1,
INSD:BP832688.1,INSD:DR373413.1,INSD:DR340463.1,
INSD:ES021601.1,INSD:ES182379.1,INSD:DR340465.1,
INSD:EL196797.1,INSD:ES082953.1,INSD:ES192325.1,
INSD:EH927954.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX823094.1,INSD:BX824934.1,INSD:AK118211.1,
INSD:AY086135.1"
/note="histone deacetylase 15 (HDA15); FUNCTIONS IN:
histone deacetylase activity; INVOLVED IN: DNA mediated
transformation, histone deacetylation; LOCATED IN:
intracellular; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876),
Histone deacetylase superfamily (InterPro:IPR000286); BEST
Arabidopsis thaliana protein match is: histone deacetylase
5 (TAIR:AT5G61060.1); Has 9240 Blast hits to 9035 proteins
in 1456 species: Archae - 223; Bacteria - 3186; Metazoa -
1508; Fungi - 639; Plants - 555; Viruses - 0; Other
Eukaryotes - 3129 (source: NCBI BLink)."
/db_xref="TAIR:AT3G18520"
/db_xref="Araport:AT3G18520"
intron_pos 46:0 (1/16)
intron_pos 108:0 (2/16)
intron_pos 142:1 (3/16)
intron_pos 164:0 (4/16)
intron_pos 189:1 (5/16)
intron_pos 211:0 (6/16)
intron_pos 229:2 (7/16)
intron_pos 271:0 (8/16)
intron_pos 313:0 (9/16)
intron_pos 330:0 (10/16)
intron_pos 353:0 (11/16)
intron_pos 389:1 (12/16)
intron_pos 416:0 (13/16)
intron_pos 443:2 (14/16)
intron_pos 459:0 (15/16)
intron_pos 517:1 (16/16)
BEGIN
1 MVVETIERSC EGSKRRHVNG GDIAVPCSGE ECSNGDINVA PGVSAKRARV SREMTFEDIY
61 GADALLNDDD DEDDDCDWEP VQAPMEFVKW CCVNCTMSNP GDMVHCCICG EHKESGILRH
121 GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKAQP HPERPDRLRA
181 IAASLATAGV FPGRCLPINA REITKQELQM VHTSEHVDAV DTTSQLLYSY FTSDTYANEY
241 SARAARLAAG LCADLATDIF TGRVKNGFAL VRPPGHHAGV RHAMGFCLHN NAAVAALVAQ
301 AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GNFYPGTGAA DEVGSNGGEG
361 YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS AGFDAARGDP LGCCDVTPAG
421 YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS ASATAVIKVL LGENPENELP IATTPSVAGL
481 QTVLDVLNIQ LEFWPSLAIS YSKLLSELEA RLIENKKNQM KRKVVRVPTW WKWGRKKLLY
541 NFLSARMISR SK
//