LOCUS AEE75898.1 618 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana high chlorophyll fluorescent 107 protein.
ACCESSION CP002686-3178
PROTEIN_ID AEE75898.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="HCF107"
/locus_tag="AT3G17040"
/gene_synonym="high chlorophyll fluorescent 107"
/note="high chlorophyll fluorescent 107 (HCF107);
FUNCTIONS IN: binding; INVOLVED IN: plastid organization,
RNA processing, regulation of translation; LOCATED IN:
chloroplast envelope; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: RNA-processing protein, HAT helix
(InterPro:IPR003107), Tetratricopeptide-like helical
(InterPro:IPR011990), Tetratricopeptide repeat-containing
(InterPro:IPR013026), Tetratricopeptide repeat
(InterPro:IPR019734); BEST Arabidopsis thaliana protein
match is: pre-mRNA splicing factor-related
(TAIR:AT4G03430.1)."
/db_xref="TAIR:AT3G17040"
/db_xref="Araport:AT3G17040"
intron_pos 36:1 (1/8)
intron_pos 160:0 (2/8)
intron_pos 208:0 (3/8)
intron_pos 310:0 (4/8)
intron_pos 330:0 (5/8)
intron_pos 412:0 (6/8)
intron_pos 449:0 (7/8)
intron_pos 508:0 (8/8)
BEGIN
1 MHFFFVPNSS SSSPSPANTS SFSLSFLTPQ IPENLFVDRS SSGVFSPQKE SANGEGEESN
61 TEEGVLVVRR PLLENSDKES SEEEGKKYPA RIDAGLSNIA KKMPIFEPER SESSSSSSAA
121 AAARAQERPL AVNLDLSLYK AKVLARNFRY KDAEKILEKC IAYWPEDGRP YVALGKILSK
181 QSKLAEARIL YEKGCQSTQG ENSYIWQCWA VLENRLGNVR RARELFDAAT VADKKHVAAW
241 HGWANLEIKQ GNISKARNLL AKGLKFCGRN EYIYQTLALL EAKAGRYEQA RYLFKQATIC
301 NSRSCASWLA WAQLEIQQER YPAARKLFEK AVQASPKNRF AWHVWGVFEA GVGNVERGRK
361 LLKIGHALNP RDPVLLQSLG LLEYKHSSAN LARALLRRAS ELDPRHQPVW IAWGWMEWKE
421 GNTTTARELY QRALSIDANT ESASRCLQAW GVLEQRAGNL SAARRLFRSS LNINSQSYVT
481 WMTWAQLEED QGDTERAEEI RNLYFQQRTE VVDDASWVTG FLDIIDPALD TVKRLLNFGQ
541 NNDNNRLTTT LRNMNRTKDS QSNQQPESSA GREDIETGSG FNLDVFLRSK LSLDPLKLDV
601 NLDSKRLERF TRGRINGA
//