LOCUS AEE75786.2 449 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Putative eukaryotic LigT protein.
ACCESSION CP002686-3014
PROTEIN_ID AEE75786.2
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G16230"
/inference="Similar to RNA sequence,
EST:INSD:BP831008.1,INSD:ES174230.1,INSD:EL191887.1,
INSD:EH864326.1,INSD:EH888205.1,INSD:EH962261.1,
INSD:EL010014.1,INSD:BP638309.1,INSD:BP644710.1,
INSD:BP637224.1,INSD:ES126757.1,INSD:EL293993.1,
INSD:ES115268.1,INSD:ES016286.1,INSD:BP623446.1,
INSD:EL135882.1,INSD:EH906525.1,INSD:DR354766.1,
INSD:EL251248.1,INSD:BE522822.1,INSD:CF773625.1,
INSD:EH812938.1"
/inference="Similar to RNA sequence, mRNA:INSD:BX822511.1"
/note="Predicted eukaryotic LigT; FUNCTIONS IN: RNA
binding, catalytic activity; INVOLVED IN: RNA metabolic
process, regulation of transcription; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: K Homology (InterPro:IPR004087), K Homology,
type 1, subgroup (InterPro:IPR018111), K Homology, type 1
(InterPro:IPR004088), Predicted eukaryotic LigT
(InterPro:IPR009210), RNA ligase/cyclic nucleotide
phosphodiesterase (InterPro:IPR009097), Protein kinase A
anchor protein, nuclear localisation signal domain
(InterPro:IPR019510); BEST Arabidopsis thaliana protein
match is: Predicted eukaryotic LigT (TAIR:AT3G16220.1);
Has 263 Blast hits to 258 proteins in 85 species: Archae -
0; Bacteria - 0; Metazoa - 179; Fungi - 13; Plants - 46;
Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink)."
/db_xref="TAIR:AT3G16230"
/db_xref="Araport:AT3G16230"
intron_pos 9:2 (1/13)
intron_pos 26:0 (2/13)
intron_pos 67:1 (3/13)
intron_pos 108:0 (4/13)
intron_pos 120:2 (5/13)
intron_pos 147:1 (6/13)
intron_pos 170:0 (7/13)
intron_pos 263:1 (8/13)
intron_pos 301:0 (9/13)
intron_pos 323:0 (10/13)
intron_pos 353:1 (11/13)
intron_pos 376:0 (12/13)
intron_pos 389:2 (13/13)
BEGIN
1 MFAYRTLFRI DRVFGFTSRC FQSKPESFSI LSFRGSEKSA MDGYKKQKMV NLVWRPISTQ
61 TSSVIAEAGN EVQEVAQCSK SSDVSKEVIE GETASVVSAG KHSVSLEVGA SLIKFIRGKE
121 GTTQMKLEEE MGVKIILPSS RNKDHISIEG GSVDCVTKAS KRIATIIDEV VRSPSLDYSH
181 FVSLPLAIHP ELVDKLVNFQ NSILGIHSIA SDKQDDQANR ATTSVAVDLK ANSETNQVNV
241 GIKSIPIVSY PPKAKSKSST LLDLGIEKSI FIKPSTFHLT VVMLKLWNKD RVNAACDVLK
301 SIFPSVMDAL DNKPVFIRLK GLDCMRGPLD KTRVLYAPVE EIGDEGRLLR ACQVITDAFV
361 KAGLVLEKDA KQSLKLHVTV MNARHRKRRK NNKKKMETFD AREIHKQFGN EDWGEYLIQE
421 AHLSQRFVFD QNGYYRCCGS IPFPGEQRA
//