LOCUS AEE75770.1 492 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RING/U-box superfamily protein protein.
ACCESSION CP002686-2996
PROTEIN_ID AEE75770.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="Hrd1A"
/locus_tag="AT3G16090"
/gene_synonym="AtHrd1A"
/gene_synonym="homolog of yeast Hrd1"
/inference="Similar to RNA sequence,
EST:INSD:ES121545.1,INSD:AV553226.1,INSD:EH847362.1,
INSD:DR352048.1,INSD:AV559665.1,INSD:T44922.1,
INSD:AU229067.1,INSD:ES019182.1,INSD:BE527218.1,
INSD:AU237951.1,INSD:BP612148.1,INSD:EH973060.1,
INSD:DR352047.1,INSD:BP671115.1,INSD:DR352046.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX824326.1,INSD:DQ059113.1,INSD:AK117158.1,
INSD:BX824962.1,INSD:BX822352.1"
/note="RING/U-box superfamily protein; FUNCTIONS IN: zinc
ion binding; LOCATED IN: endomembrane system; EXPRESSED
IN: 23 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type
(InterPro:IPR001841), Zinc finger, C3HC4 RING-type
(InterPro:IPR018957); BEST Arabidopsis thaliana protein
match is: RING/U-box superfamily protein
(TAIR:AT1G65040.2); Has 7341 Blast hits to 7321 proteins
in 267 species: Archae - 0; Bacteria - 4; Metazoa - 2254;
Fungi - 727; Plants - 3286; Viruses - 21; Other Eukaryotes
- 1049 (source: NCBI BLink)."
/db_xref="TAIR:AT3G16090"
/db_xref="Araport:AT3G16090"
intron_pos 178:2 (1/6)
intron_pos 237:2 (2/6)
intron_pos 287:2 (3/6)
intron_pos 356:1 (4/6)
intron_pos 409:2 (5/6)
intron_pos 461:0 (6/6)
BEGIN
1 MIRLRTYAGL SFMATLAVIY HAFSSRGQFY PATVYLSTSK ISLVLLLNMC LVLMLSLWHL
61 VKFVFLGSLR EAEVERLNEQ AWRELMEILF AITIFRQDFS SGFLPLVVTL LLIKALHWLA
121 QKRVEYIETT PSVSKLSHFR IVSFMGFLLL VDSLFMYSSI RHLIQSRQAS VSLFFSFEYM
181 ILATTTVAIF VKYVFYVTDM LMDGQWEKKP VYTFYLELIR DLLHLSMYIC FFFVIFMNYG
241 VPLHLLRELY ETFRNFQIRV SDYLRYRKIT SNMNDRFPDA TPEELTASDA TCIICREEMT
301 NAKKLICGHL FHVHCLRSWL ERQQTCPTCR ALVVPPENAT SAAPGQRELH QGSQQGTSSS
361 GNQGSEISSS AGVSNNSLSR HHARLQAAAS AASVYGKSMV YPSANTVAWS SGVPGTEQVS
421 TEPDQTLPQH NLPVENSHAY ANMSETKLEE MRKSLETHLE ILRNRLHFLE TRKPESAGEP
481 ENKGKSVADA AE
//