LOCUS AEE75754.1 465 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana NUP50 (Nucleoporin 50 kDa) protein protein.
ACCESSION CP002686-2968
PROTEIN_ID AEE75754.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G15970"
/inference="Similar to RNA sequence,
EST:INSD:EL975021.1,INSD:DR245044.1,INSD:ES160810.1,
INSD:ES181878.1,INSD:AU230439.1,INSD:ES109872.1,
INSD:EL247270.1,INSD:EL268832.1,INSD:EL976730.1,
INSD:EL995767.1,INSD:DR245041.1,INSD:AU239162.1,
INSD:EL970233.1,INSD:EL986951.1,INSD:DR379298.1,
INSD:ES197099.1,INSD:EL047969.1,INSD:EL976002.1,
INSD:F15283.1,INSD:EH886528.1,INSD:BP806236.1,
INSD:ES070844.1,INSD:EH974732.1,INSD:ES189675.1,
INSD:EL138989.1,INSD:BP858528.1,INSD:EL306245.1,
INSD:F15284.1,INSD:DR245043.1,INSD:DR245042.1,
INSD:EL976363.1,INSD:EG488557.1,INSD:ES004815.1,
INSD:EL149299.1,INSD:AA597380.1,INSD:EL982770.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK118302.1,INSD:AY084443.1"
/note="NUP50 (Nucleoporin 50 kDa) protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN: intracellular
transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Ran binding protein 1
(InterPro:IPR000156), Pleckstrin homology-type
(InterPro:IPR011993), Nuclear pore complex, NUP2/50/61
(InterPro:IPR015007); BEST Arabidopsis thaliana protein
match is: NUP50 (Nucleoporin 50 kDa) protein
(TAIR:AT1G52380.1); Has 4078 Blast hits to 2719 proteins
in 441 species: Archae - 18; Bacteria - 1103; Metazoa -
1379; Fungi - 710; Plants - 228; Viruses - 8; Other
Eukaryotes - 632 (source: NCBI BLink)."
/db_xref="TAIR:AT3G15970"
/db_xref="Araport:AT3G15970"
BEGIN
1 MGDSDNAIPF SRKRTALKEL SRDNPGLDDD DEDTSALESG TFNTASKEVL ASRRIIRVRR
61 TDRSATAPPA SNPFTGIRLV PFTAPAPSTA AAETTKPLSA GKQETLADGR SDATKETDGD
121 SKEKSDAIDA VGKQETQGDE ISAKTKDIID GGEKEMSEAV NSVEGGGAVN KNEDEIKTTM
181 VTEVAAGEET VKDDNNNSNT VEGSDCVVKD TGGNQTEKEG KEGDGNEDTE KNGDSGALSS
241 FHQHSSSKNA FTGLASTGFS ASSFSFGLVP QEGSTGSGSE QSSFSFGQAN NGNSSLFGAS
301 VATSITTKST ETTTAFPSKQ DVSVETGEEN EKAAFTADSV MFEYLEGGWK ERGKGELKVN
361 ISTTENRKAR LVMRSKGNYR LTLNASLYPE MKLAKMDKKG ITFACVNSVS DAKDGLSTLA
421 LKFKDPTVVE EFRAVIEEHK DSKPSVAEAA APLKTPENSP SAEDA
//