LOCUS AEE75679.1 315 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Ribosomal RNA processing Brix domain
protein protein.
ACCESSION CP002686-2873
PROTEIN_ID AEE75679.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G15460"
/inference="Similar to RNA sequence,
EST:INSD:AV782747.1,INSD:BP602091.1,INSD:BP669001.1,
INSD:DR327465.1,INSD:AV785322.1,INSD:EL059351.1,
INSD:EH865562.1,INSD:BP608689.1,INSD:ES151220.1,
INSD:BP641002.1,INSD:ES083837.1,INSD:BP641223.1,
INSD:BP596240.1,INSD:EL317368.1,INSD:ES047125.1,
INSD:ES202875.1,INSD:AV790412.1,INSD:BP605942.1,
INSD:EH883598.1,INSD:ES193685.1,INSD:EL066071.1,
INSD:AV548962.1,INSD:AV813151.1,INSD:BP588891.1,
INSD:BP820693.1,INSD:AV544025.1,INSD:EL993606.1,
INSD:ES133734.1,INSD:ES073777.1,INSD:ES122693.1,
INSD:EH978354.1,INSD:BP658922.1,INSD:EL026949.1,
INSD:ES039833.1,INSD:EL098076.1,INSD:AV798986.1,
INSD:ES152223.1,INSD:BP597250.1,INSD:ES133073.1,
INSD:BE521583.1,INSD:BP605443.1,INSD:BP655555.1,
INSD:DR370347.1,INSD:EH918410.1,INSD:BP608304.1,
INSD:AV796542.1,INSD:EH898615.1,INSD:BP620796.1,
INSD:EL056831.1,INSD:BP619653.1,INSD:ES026275.1,
INSD:ES209008.1,INSD:EL006347.1,INSD:BP588411.1,
INSD:EH863160.1,INSD:DR374411.1,INSD:EL224138.1,
INSD:ES173562.1,INSD:BP624659.1,INSD:BP671213.1,
INSD:AV798637.1,INSD:EH809398.1,INSD:EL181626.1,
INSD:EG472838.1,INSD:BP620708.1,INSD:BP663166.1,
INSD:BP619932.1,INSD:BP658521.1,INSD:DR377049.1,
INSD:BP622293.1,INSD:EL131964.1,INSD:BP611312.1,
INSD:BP621973.1,INSD:BP787543.1,INSD:ES109884.1,
INSD:AV535545.1,INSD:EL989380.1,INSD:BP591516.1,
INSD:AV818170.1,INSD:CB260382.1,INSD:EL040799.1,
INSD:BP609539.1,INSD:ES168010.1,INSD:EL119287.1,
INSD:BP631479.1,INSD:EL071546.1,INSD:AV805864.1,
INSD:DR327464.1,INSD:ES151404.1,INSD:AV810251.1,
INSD:BP613638.1,INSD:AV531143.1,INSD:EL040402.1,
INSD:EL257479.1,INSD:ES018736.1,INSD:AI100144.1,
INSD:EL202785.1,INSD:BP665660.1,INSD:EL019827.1,
INSD:EL167021.1,INSD:DR357979.1,INSD:AV800020.1,
INSD:EG527212.1,INSD:BP667180.1,INSD:DR358000.1,
INSD:BP645296.1,INSD:BP587344.1,INSD:BP645757.1,
INSD:EL017232.1,INSD:BP792051.1,INSD:EL291946.1,
INSD:EL978158.1,INSD:BP833481.1,INSD:AV530406.1,
INSD:BP610458.1,INSD:EL998122.1,INSD:BP822183.2,
INSD:AV820489.1,INSD:EL236179.1,INSD:DR378114.1,
INSD:EL976083.1,INSD:BP620530.1,INSD:AV566562.1,
INSD:BP647845.1,INSD:EG480865.1,INSD:BP658201.1,
INSD:BP598392.1,INSD:BP665464.1,INSD:ES068219.1,
INSD:BP645075.1,INSD:EL261394.1,INSD:AV521516.1,
INSD:BP591394.1,INSD:EL313484.1,INSD:BP601175.1,
INSD:BP777747.1,INSD:BP603148.1,INSD:BP630886.1,
INSD:ES003191.1,INSD:EL136353.1,INSD:EL271225.1,
INSD:AV557091.1,INSD:EH877580.1,INSD:EL156782.1,
INSD:ES024495.1,INSD:EL326504.1,INSD:BP610609.1,
INSD:AV531228.1,INSD:BP838001.1,INSD:ES020768.1,
INSD:EH994800.1,INSD:ES102278.1,INSD:DR327462.1,
INSD:EH885183.1,INSD:AV801018.1,INSD:DR357998.1,
INSD:ES198217.1,INSD:BP593227.1,INSD:EL281111.1,
INSD:EG472844.1,INSD:BP648178.1,INSD:ES191644.1,
INSD:BP614099.1,INSD:BP598529.1,INSD:BP609557.1,
INSD:EL169958.1,INSD:T42102.1,INSD:AV799974.1,
INSD:EL078256.1,INSD:EL171988.1,INSD:DR327467.1,
INSD:BP619250.1,INSD:AV800808.1,INSD:ES000459.1,
INSD:BP664916.1,INSD:ES033290.1,INSD:EH833613.1,
INSD:ES070122.1,INSD:ES096735.1,INSD:BE521581.1,
INSD:ES160129.1,INSD:EH840722.1,INSD:ES124798.1,
INSD:EL069206.1,INSD:BP671337.1,INSD:AV802964.1,
INSD:EH936560.1,INSD:AV824156.1,INSD:AV531226.1,
INSD:BP662315.1,INSD:AI998532.1,INSD:EL083703.1,
INSD:AV811016.1,INSD:BE521868.1,INSD:ES167807.1,
INSD:Z34153.1,INSD:BP645197.1,INSD:BP588644.1,
INSD:ES075332.1,INSD:EH931068.1,INSD:BP605612.1,
INSD:ES013187.1,INSD:ES172896.1,INSD:BP618419.1,
INSD:ES078803.1,INSD:EL054042.1,INSD:BP602111.1,
INSD:DR230676.1,INSD:DR327463.1,INSD:EH865898.1,
INSD:ES113583.1,INSD:AV808360.1,INSD:DR327466.1,
INSD:BP640931.1,INSD:BP617589.1,INSD:DR327461.1,
INSD:BP609909.1,INSD:AV534988.1,INSD:EH892031.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY143861.1,INSD:BX822768.1,INSD:AY058120.1,
INSD:AY086298.1"
/note="Ribosomal RNA processing Brix domain protein;
CONTAINS InterPro DOMAIN/s: Brix domain
(InterPro:IPR007109); BEST Arabidopsis thaliana protein
match is: Ribosomal RNA processing Brix domain protein
(TAIR:AT1G52930.1); Has 415 Blast hits to 413 proteins in
206 species: Archae - 0; Bacteria - 0; Metazoa - 124;
Fungi - 138; Plants - 66; Viruses - 0; Other Eukaryotes -
87 (source: NCBI BLink)."
/db_xref="TAIR:AT3G15460"
/db_xref="Araport:AT3G15460"
intron_pos 66:2 (1/7)
intron_pos 114:0 (2/7)
intron_pos 140:1 (3/7)
intron_pos 182:0 (4/7)
intron_pos 216:0 (5/7)
intron_pos 239:0 (6/7)
intron_pos 272:0 (7/7)
BEGIN
1 MGRKRKHSET VTAAPVKDSA PERPQRTLLG WKDKKEDAEN SKPAYASVFR NKEKVLVTCS
61 RRINFRYRHL MLNMVSLLPH CKKDSKVEAK SSRGATLNEL IELKGSSSCL FFECRKHKDL
121 YMWMVKSPGG PSVKFLVNAV HTMEELKLTG NHLKGSRPLL TFSSNFENDA HWKLLKEMLT
181 QIFGIPEGHR KSKPYHDHVF VFSIVDDHIW FRNYQISVPH NESDKIARGD LDKMTLIEVG
241 PRFCLNPIKI FGGSFGGTTL YENPFYVSPN QIRALEKRNK AGKFAKKIKA KTRRKMHELS
301 NPLEPDEFTD MWNDE
//