LOCUS AEE75662.1 490 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana silencing defective 5 protein.
ACCESSION CP002686-2850
PROTEIN_ID AEE75662.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="SDE5"
/locus_tag="AT3G15390"
/gene_synonym="silencing defective 5"
/inference="Similar to RNA sequence,
EST:INSD:EG441775.1,INSD:EG441477.1,INSD:EG446784.1,
INSD:EG446991.1,INSD:EG441495.1,INSD:EG441847.1,
INSD:EG446846.1,INSD:EG446833.1,INSD:EG520925.1,
INSD:EG441831.1,INSD:EG441484.1,INSD:EG442677.1,
INSD:EG441474.1,INSD:ES057762.1,INSD:EG446832.1,
INSD:EG441485.1,INSD:EG446995.1,INSD:EG442681.1,
INSD:EG446978.1,INSD:EG447002.1,INSD:EG520920.1,
INSD:EG446850.1,INSD:EG446996.1,INSD:EG442590.1,
INSD:EG446999.1,INSD:EG446849.1,INSD:DR381487.1,
INSD:EG441792.1,INSD:EG441853.1,INSD:EG446840.1,
INSD:EG441825.1,INSD:EG441496.1,INSD:DR255321.1,
INSD:EG441777.1,INSD:EG446990.1,INSD:BP792828.1,
INSD:EH825745.1,INSD:EL003156.1,INSD:EG446827.1"
/note="silencing defective 5 (SDE5); CONTAINS InterPro
DOMAIN/s: Domain of unknown function DUF1771
(InterPro:IPR013899); BEST Arabidopsis thaliana protein
match is: smr (Small MutS Related) domain-containing
protein (TAIR:AT5G58720.1); Has 92 Blast hits to 92
proteins in 30 species: Archae - 0; Bacteria - 4; Metazoa
- 16; Fungi - 4; Plants - 47; Viruses - 0; Other
Eukaryotes - 21 (source: NCBI BLink)."
/db_xref="TAIR:AT3G15390"
/db_xref="Araport:AT3G15390"
intron_pos 186:1 (1/10)
intron_pos 195:0 (2/10)
intron_pos 218:0 (3/10)
intron_pos 241:2 (4/10)
intron_pos 322:1 (5/10)
intron_pos 349:0 (6/10)
intron_pos 368:0 (7/10)
intron_pos 390:2 (8/10)
intron_pos 431:1 (9/10)
intron_pos 452:0 (10/10)
BEGIN
1 MSKIASSSNS DPDSRSLQVL LDTFGSRFSL DDIAAAYCQA SQNVDVAGEI LSAMAEKTPQ
61 CDQVEMKTAT SKPTQVYVPK EVPRQEDSKA KVWRPKRNSI SNGTVSSVIG KEYARTRPIS
121 NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV
181 IHQVLGVCGY DVKKSTEKLL DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ
241 SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301 LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER
361 AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED EVVTVNMNEH EAKEALRLLK
421 RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI
481 DPKKLSFAKK
//