LOCUS AEE75468.1 427 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs)
family protein protein.
ACCESSION CP002686-2594
PROTEIN_ID AEE75468.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G14100"
/inference="Similar to RNA sequence,
EST:INSD:EL997437.1,INSD:EG518140.1,INSD:EL189090.1,
INSD:DR226364.1,INSD:AV813547.1,INSD:BP608108.1,
INSD:EG442567.1,INSD:EL080284.1,INSD:EH926027.1,
INSD:AV782662.1,INSD:EH805913.1,INSD:BP867134.1,
INSD:EH798832.1,INSD:EH845272.1,INSD:EL201044.1,
INSD:EH881996.1,INSD:EL009828.1,INSD:EH923260.1,
INSD:EH832297.1,INSD:ES069727.1,INSD:EL074259.1,
INSD:Z26237.1,INSD:AA712758.1,INSD:EL025437.1,
INSD:EH800672.1,INSD:EL008146.1,INSD:EH834586.1,
INSD:EL274418.1,INSD:ES123181.1,INSD:DR226363.1,
INSD:EG459060.1,INSD:AA712759.1,INSD:ES087039.1,
INSD:EH988039.1,INSD:EL010784.1,INSD:BP844296.1,
INSD:EH882634.1,INSD:EL050270.1,INSD:EH901325.1,
INSD:EL217106.1,INSD:BP610088.1,INSD:EL316981.1,
INSD:ES143609.1,INSD:EH927342.1,INSD:EL250423.1,
INSD:BP571448.1,INSD:BP821297.1,INSD:EL029616.1,
INSD:EH994290.1,INSD:ES174785.1,INSD:ES046824.1,
INSD:BP583507.1,INSD:EG442568.1,INSD:BP794145.1,
INSD:EH885100.1,INSD:EG442512.1,INSD:EG454127.1,
INSD:EL339381.1,INSD:BP849496.1,INSD:EH935834.1,
INSD:CD529143.1,INSD:EH882489.1,INSD:EG447512.1,
INSD:BX835660.1,INSD:EL077697.1,INSD:EG501658.1,
INSD:BP575000.1,INSD:EL120600.1,INSD:EL027310.1,
INSD:EL283208.1,INSD:BX834529.1,INSD:EH987838.1,
INSD:BP631587.1,INSD:EL269743.1,INSD:EL086447.1,
INSD:BP643987.1,INSD:AV559511.1,INSD:ES070453.1,
INSD:EL068476.1,INSD:EH910195.1,INSD:BP613328.1,
INSD:EL292328.1,INSD:EL253451.1,INSD:ES109238.1,
INSD:EG469652.1,INSD:EL253653.1,INSD:EG466927.1,
INSD:EG471670.1,INSD:ES085246.1,INSD:EL979354.1,
INSD:EL041455.1,INSD:EH796205.1,INSD:BP645116.1,
INSD:AA713256.1,INSD:BP656924.1,INSD:BP809192.1,
INSD:BP569584.1,INSD:BP619317.1,INSD:ES158793.1,
INSD:BP650948.1,INSD:DR376042.1,INSD:EL270625.1,
INSD:EH912473.1,INSD:EH949041.1,INSD:EG487632.1,
INSD:EG453467.1,INSD:EG501657.1,INSD:AV541671.1,
INSD:EL157147.1,INSD:EL293049.1,INSD:EG466930.1,
INSD:EG421021.1,INSD:DR292531.1,INSD:EL153279.1,
INSD:AV531095.1,INSD:EG442508.1,INSD:EH864392.1,
INSD:ES142040.1,INSD:BP607698.1,INSD:EH947735.1,
INSD:EH801881.1,INSD:BP616097.1,INSD:EL053317.1,
INSD:ES078337.1,INSD:EG518153.1,INSD:EL007055.1,
INSD:EG454126.1,INSD:BX837635.1,INSD:AV787376.1,
INSD:EL309971.1,INSD:EL976976.1,INSD:EL024714.1,
INSD:AV564644.1,INSD:AA395556.1,INSD:DR376712.1,
INSD:BP573141.1,INSD:BP821596.1,INSD:EL002277.1,
INSD:EL295428.1,INSD:DR292530.1,INSD:EH952264.1,
INSD:EL101859.1,INSD:ES090214.1,INSD:DR292533.1,
INSD:ES188622.1,INSD:BP598309.1,INSD:EL153646.1,
INSD:ES001624.1,INSD:ES066405.1,INSD:DR375717.1,
INSD:EL339679.1,INSD:EL152964.1,INSD:R30154.1,
INSD:EL235154.1,INSD:BP656102.1,INSD:DR292534.1,
INSD:BP635217.1,INSD:EH822300.1,INSD:EG449904.1,
INSD:EH964332.1,INSD:AV822039.1,INSD:EH862147.1,
INSD:BP655206.1,INSD:EH903107.1,INSD:EL297134.1,
INSD:AV537346.1,INSD:DR226366.1,INSD:EL179477.1,
INSD:BP651743.1,INSD:EL108306.1,INSD:DR226365.1,
INSD:EL183037.1,INSD:EL274049.1,INSD:BP570791.1,
INSD:EL086860.1,INSD:EH916809.1,INSD:EH986489.1,
INSD:ES132479.1,INSD:Z25496.1,INSD:BP608599.1,
INSD:EL272041.1,INSD:EH878342.1,INSD:EL256219.1,
INSD:ES033904.1,INSD:BP587109.1,INSD:EH813029.1,
INSD:EL027431.1,INSD:BP810084.1,INSD:ES022165.1,
INSD:EL152640.1,INSD:AI996125.1,INSD:BE039308.1,
INSD:EH935250.1,INSD:BP808155.1,INSD:EG447514.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY087692.1,INSD:BX825019.1,INSD:AY139775.1,
INSD:BX823141.1,INSD:BT004540.1"
/note="RNA-binding (RRM/RBD/RNP motifs) family protein;
FUNCTIONS IN: mRNA 3'-UTR binding; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 14 growth stages; CONTAINS
InterPro DOMAIN/s: RNA recognition motif, RNP-1
(InterPro:IPR000504), Nucleotide-binding, alpha-beta plait
(InterPro:IPR012677); BEST Arabidopsis thaliana protein
match is: oligouridylate-binding protein 1A
(TAIR:AT1G54080.1); Has 33134 Blast hits to 32894 proteins
in 1695 species: Archae - 47; Bacteria - 3311; Metazoa -
12038; Fungi - 6892; Plants - 9686; Viruses - 3; Other
Eukaryotes - 1157 (source: NCBI BLink)."
/db_xref="TAIR:AT3G14100"
/db_xref="Araport:AT3G14100"
intron_pos 41:0 (1/11)
intron_pos 61:2 (2/11)
intron_pos 96:0 (3/11)
intron_pos 121:2 (4/11)
intron_pos 142:1 (5/11)
intron_pos 171:2 (6/11)
intron_pos 197:0 (7/11)
intron_pos 207:1 (8/11)
intron_pos 247:1 (9/11)
intron_pos 276:0 (10/11)
intron_pos 335:0 (11/11)
BEGIN
1 MQNPRLKQHQ QQQQQQAMMQ QQALMQQHSL YHPGVLAPPQ LEPVPSGNLP PGFDPSTCRS
61 VYVGNIHTQV TEPLLQEIFT STGPVESSKL IRKDKSSYGF VHYFDRRSAA LAILSLNGRH
121 LFGQPIKVNW AYATGQREDT SSHFNIFVGD LSPEVTDATL YQSFSVFSSC SDARVMWDQK
181 TGRSRGFGFV SFRNQQDAQT AINEMNGKWL SSRQIRCNWA TKGATSGDDK LSSDGKSVVE
241 LTTGSSEDGK ETLNEETPEN NSQFTTVYVG NLAPEVTQLD LHRYFHALGA GVIEEVRVQR
301 DKGFGFVRYN THPEAALAIQ MGNTQPYLFN RQIKCSWGNK PTPPGTASNP LPPPAPAPVP
361 GLSAADLLNY ERQLALSKMA SVNALMHQQG QHPLRQAHGI NAAGATAAMY DGGFQNVAAA
421 QQLMYYQ
//